Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30093
(743 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_0871 - 20441689-20441756,20442220-20442349,20442422-204425... 144 5e-35
02_04_0100 - 19730137-19730237,19731215-19731344,19731419-197315... 143 2e-34
02_01_0469 - 3359156-3359500,3359595-3359680,3359766-3359811,335... 141 6e-34
02_01_0045 + 307058-307552,308670-308716,308779-308866,309664-30... 50 2e-06
03_01_0281 + 2160480-2162003 31 0.73
01_05_0772 + 25056973-25057285,25057678-25058006,25058113-250583... 30 1.7
02_02_0321 - 8934512-8935504,8935581-8935715,8935831-8936217 29 3.9
08_02_0250 + 14772746-14773037,14773141-14773203,14773458-147736... 29 5.2
01_06_0325 - 28488446-28489369 28 6.8
12_01_0916 + 8959866-8959958,8960429-8960583,8960676-8961055,896... 28 9.0
06_03_0265 - 18923597-18924367,18924459-18924704 28 9.0
02_05_0261 + 27243898-27243938,27244068-27244157,27244293-272443... 28 9.0
>04_03_0871 -
20441689-20441756,20442220-20442349,20442422-20442507,
20444271-20444316,20444425-20444547,20445302-20445370
Length = 173
Score = 144 bits (350), Expect = 5e-35
Identities = 70/95 (73%), Positives = 79/95 (83%)
Frame = -2
Query: 541 RLSHGPEKKQSAKEEVQVTLGPQHLVGETVFGVAHIFASFNDTFVHVTDLSGRETIARVT 362
R G +K + KEE VTLGP GE VFGVAHIFASFNDTF+HVTDLSGRET+ R+T
Sbjct: 21 RFKSGRKKTREPKEE-NVTLGPTVREGEYVFGVAHIFASFNDTFIHVTDLSGRETLVRIT 79
Query: 361 GGMKVKADRDEASPYAAMLAAQDVAEKCKTLGITA 257
GGMKVKADRDE+SPYAAMLA+QDVA++CK LGITA
Sbjct: 80 GGMKVKADRDESSPYAAMLASQDVAQRCKELGITA 114
Score = 46.0 bits (104), Expect = 3e-05
Identities = 26/48 (54%), Positives = 27/48 (56%)
Frame = -1
Query: 257 LHIKLRAXXXXXXXXXXXGAQXXXXXXXXXSMKIGRIEDVTPVPSDST 114
LHIKLRA GAQ MKIGRIEDVTPVP+DST
Sbjct: 115 LHIKLRATGGNKTKTPGPGAQSALRALARSGMKIGRIEDVTPVPTDST 162
>02_04_0100 -
19730137-19730237,19731215-19731344,19731419-19731504,
19732410-19732455,19732558-19732680,19732779-19732781
Length = 162
Score = 143 bits (346), Expect = 2e-34
Identities = 69/91 (75%), Positives = 78/91 (85%)
Frame = -2
Query: 529 GPEKKQSAKEEVQVTLGPQHLVGETVFGVAHIFASFNDTFVHVTDLSGRETIARVTGGMK 350
G +K + KEE VTLGP GE VFGVAHIFASFNDTF+HVTDLSGRET+ R+TGGMK
Sbjct: 3 GRKKTREPKEE-NVTLGPTVREGEYVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMK 61
Query: 349 VKADRDEASPYAAMLAAQDVAEKCKTLGITA 257
VKADRDE+SPYAAMLA+QDVA++CK LGITA
Sbjct: 62 VKADRDESSPYAAMLASQDVAQRCKELGITA 92
Score = 33.5 bits (73), Expect = 0.18
Identities = 26/59 (44%), Positives = 27/59 (45%), Gaps = 11/59 (18%)
Frame = -1
Query: 257 LHIKLRAXXXXXXXXXXXGAQXXXXXXXXXSMKIGRI-----------EDVTPVPSDST 114
LHIKLRA GAQ MKIGRI EDVTPVP+DST
Sbjct: 93 LHIKLRATGGNKTKTPGPGAQSALRALARSGMKIGRIADDVLSIFCHTEDVTPVPTDST 151
>02_01_0469 -
3359156-3359500,3359595-3359680,3359766-3359811,
3359897-3360016,3360622-3360624
Length = 199
Score = 141 bits (341), Expect = 6e-34
Identities = 68/88 (77%), Positives = 76/88 (86%)
Frame = -2
Query: 520 KKQSAKEEVQVTLGPQHLVGETVFGVAHIFASFNDTFVHVTDLSGRETIARVTGGMKVKA 341
K + KEE VTLGP GE VFGVAHIFASFNDTF+HVTDLSGRET+ R+TGGMKVKA
Sbjct: 5 KTREPKEE-NVTLGPTVREGEYVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKA 63
Query: 340 DRDEASPYAAMLAAQDVAEKCKTLGITA 257
DRDE+SPYAAMLA+QDVA++CK LGITA
Sbjct: 64 DRDESSPYAAMLASQDVAQRCKELGITA 91
>02_01_0045 +
307058-307552,308670-308716,308779-308866,309664-309756,
309788-309950,310554-310627,310889-310927
Length = 332
Score = 50.0 bits (114), Expect = 2e-06
Identities = 23/31 (74%), Positives = 26/31 (83%)
Frame = -2
Query: 367 VTGGMKVKADRDEASPYAAMLAAQDVAEKCK 275
V GGMK+KAD DE+SPYAAML +QDVA CK
Sbjct: 211 VGGGMKIKADCDESSPYAAMLVSQDVALCCK 241
Score = 29.5 bits (63), Expect = 2.9
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = -2
Query: 367 VTGGMKVKADRDEASPYAAMLAAQDVA 287
V GGM +K+D DE SP+ + + D++
Sbjct: 166 VGGGMNIKSDCDEPSPHCSCVGQTDIS 192
>03_01_0281 + 2160480-2162003
Length = 507
Score = 31.5 bits (68), Expect = 0.73
Identities = 19/61 (31%), Positives = 29/61 (47%)
Frame = +3
Query: 129 YGGDIFNAANLHT*TSKSPKCRLSTRTRGLCFVSTSSTELYVKAVMPRVLHFSATSCAAN 308
+G IFN ++ L+ R R FVS S KA++P + HF+AT + N
Sbjct: 113 FGDGIFNVDGDSWRRQRAKAQLLTCRPRFRAFVSRCSRAKVEKALLPLLAHFAATGESCN 172
Query: 309 I 311
+
Sbjct: 173 L 173
>01_05_0772 +
25056973-25057285,25057678-25058006,25058113-25058360,
25058481-25059396
Length = 601
Score = 30.3 bits (65), Expect = 1.7
Identities = 14/45 (31%), Positives = 23/45 (51%)
Frame = -2
Query: 358 GMKVKADRDEASPYAAMLAAQDVAEKCKTLGITAFT*SSVLLVET 224
G+ +K++ D P ++ +DV E+CK +SVLL T
Sbjct: 341 GLMLKSNMDSGEPSNLRMSTEDVIEECKLFYFAGMETTSVLLTWT 385
>02_02_0321 - 8934512-8935504,8935581-8935715,8935831-8936217
Length = 504
Score = 29.1 bits (62), Expect = 3.9
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = +2
Query: 623 RKKVKMTDKPKRPMSAYMLWLNSAR 697
+KK K KPK+PMSAY ++ R
Sbjct: 276 KKKEKDPSKPKQPMSAYFVYTQQRR 300
>08_02_0250 +
14772746-14773037,14773141-14773203,14773458-14773621,
14774126-14774220,14774517-14774728,14774972-14775009,
14775131-14775424,14775510-14775617
Length = 421
Score = 28.7 bits (61), Expect = 5.2
Identities = 12/34 (35%), Positives = 15/34 (44%)
Frame = -3
Query: 252 HKAPCYWWKQNKDPWSWCSVCTSGSCSFKYEDWP 151
H PC+ W + W WC SG C + WP
Sbjct: 348 HGWPCWGW-DGAEMWLWCQSKNSGHC---HIGWP 377
>01_06_0325 - 28488446-28489369
Length = 307
Score = 28.3 bits (60), Expect = 6.8
Identities = 27/96 (28%), Positives = 42/96 (43%)
Frame = +3
Query: 87 ASSSATLPTGRV*WYGGDIFNAANLHT*TSKSPKCRLSTRTRGLCFVSTSSTELYVKAVM 266
+SS + LP+G YG + L + K +C L ++RG C S + T L
Sbjct: 221 SSSQSALPSGE---YGQVLKKGFELAWKSRKDKQCNLCEQSRGQCAYSQNRTFLGCLCAD 277
Query: 267 PRVLHFSATSCAANIAA*GDASSRSAFTFMPPVTRA 374
+V S+T C ++ + D S F PP +A
Sbjct: 278 GKV---SSTDCTSSKSFDADPS-----FFSPPFCKA 305
>12_01_0916 +
8959866-8959958,8960429-8960583,8960676-8961055,
8961142-8962122,8962699-8962829
Length = 579
Score = 27.9 bits (59), Expect = 9.0
Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 4/48 (8%)
Frame = -2
Query: 478 PQHLVGETVFGVAHIFASFNDTF----VHVTDLSGRETIARVTGGMKV 347
P HL G F +A F ++N+T ++ D R T+A TGG V
Sbjct: 481 PMHLHGFNFFVLAQGFGNYNETTDPAKFNLVDPQERNTVAVPTGGWAV 528
>06_03_0265 - 18923597-18924367,18924459-18924704
Length = 338
Score = 27.9 bits (59), Expect = 9.0
Identities = 13/32 (40%), Positives = 16/32 (50%)
Frame = -1
Query: 392 IRPGNYRPCHWWHEGEG*P**SVTLRCYVGGT 297
++ GN RP HWW E V L+C V T
Sbjct: 311 VKMGNIRPKHWWTPAE------VRLKCSVANT 336
>02_05_0261 +
27243898-27243938,27244068-27244157,27244293-27244350,
27244441-27244485,27244778-27244855,27244940-27245041,
27245150-27245173
Length = 145
Score = 27.9 bits (59), Expect = 9.0
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = +2
Query: 623 RKKVKMTDKPKRPMSAYMLWLNSAR 697
RKK + KPKRP SA+ ++++ R
Sbjct: 24 RKKAAASGKPKRPPSAFFVFMSEFR 48
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,207,143
Number of Sequences: 37544
Number of extensions: 442326
Number of successful extensions: 1065
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1041
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1064
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1968901276
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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