Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30093
(743 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_37595| Best HMM Match : Ribosomal_S11 (HMM E-Value=0) 134 5e-32
SB_12646| Best HMM Match : SSrecog (HMM E-Value=0) 36 0.026
SB_15122| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.0
SB_53304| Best HMM Match : HMG_box (HMM E-Value=1.9e-32) 29 4.0
SB_31804| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.0
SB_56400| Best HMM Match : MTS (HMM E-Value=0.44) 29 5.3
SB_24989| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.3
SB_13764| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.3
SB_32644| Best HMM Match : zf-C2H2 (HMM E-Value=0) 28 9.2
SB_3516| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.2
SB_7613| Best HMM Match : DNA_pol3_beta (HMM E-Value=4.9) 28 9.2
>SB_37595| Best HMM Match : Ribosomal_S11 (HMM E-Value=0)
Length = 543
Score = 134 bits (325), Expect = 5e-32
Identities = 66/77 (85%), Positives = 71/77 (92%), Gaps = 1/77 (1%)
Frame = -2
Query: 484 LGPQHL-VGETVFGVAHIFASFNDTFVHVTDLSGRETIARVTGGMKVKADRDEASPYAAM 308
LG +H+ GE VFGVAHIFASFNDTFVHVTDLSGRETI+RVTGGMKVKADRDEASPYAAM
Sbjct: 187 LGWRHVGEGELVFGVAHIFASFNDTFVHVTDLSGRETISRVTGGMKVKADRDEASPYAAM 246
Query: 307 LAAQDVAEKCKTLGITA 257
LAAQDVA +CK +GITA
Sbjct: 247 LAAQDVAARCKEIGITA 263
>SB_12646| Best HMM Match : SSrecog (HMM E-Value=0)
Length = 783
Score = 36.3 bits (80), Expect = 0.026
Identities = 16/24 (66%), Positives = 17/24 (70%)
Frame = +2
Query: 626 KKVKMTDKPKRPMSAYMLWLNSAR 697
KK K + PKR MSAYMLWLN R
Sbjct: 534 KKKKDPNAPKRAMSAYMLWLNDTR 557
>SB_15122| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 709
Score = 29.5 bits (63), Expect = 3.0
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = +2
Query: 635 KMTDKPKRPMSAYMLWLNSARNR 703
K K KRPM+++M+W SAR +
Sbjct: 106 KKDPKVKRPMNSFMVWAQSARRK 128
>SB_53304| Best HMM Match : HMG_box (HMM E-Value=1.9e-32)
Length = 398
Score = 29.1 bits (62), Expect = 4.0
Identities = 12/23 (52%), Positives = 17/23 (73%), Gaps = 2/23 (8%)
Frame = +2
Query: 641 TDKP--KRPMSAYMLWLNSARNR 703
T KP KRPM+A+M+W +AR +
Sbjct: 59 TQKPHVKRPMNAFMVWAQAARRK 81
>SB_31804| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2047
Score = 29.1 bits (62), Expect = 4.0
Identities = 16/49 (32%), Positives = 22/49 (44%)
Frame = -3
Query: 258 PSHKAPCYWWKQNKDPWSWCSVCTSGSCSFKYEDWPH*RCHPRTIRLDP 112
P HKA + + W V +S C Y D+P R + TI L+P
Sbjct: 1089 PIHKAVVHNSYSSLKKLLWAGVGSSLRCDKAYFDYPRKRVNDTTIHLEP 1137
>SB_56400| Best HMM Match : MTS (HMM E-Value=0.44)
Length = 230
Score = 28.7 bits (61), Expect = 5.3
Identities = 14/38 (36%), Positives = 24/38 (63%)
Frame = -2
Query: 445 VAHIFASFNDTFVHVTDLSGRETIARVTGGMKVKADRD 332
+ +I +FND + DLSG+ETI ++ K++ +RD
Sbjct: 154 IIYIEDTFNDLLRTLRDLSGKETIVLIS--CKIRYERD 189
>SB_24989| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 143
Score = 28.7 bits (61), Expect = 5.3
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = +2
Query: 635 KMTDKPKRPMSAYMLWLNSARNR 703
K D KRPM+AYM+W R R
Sbjct: 3 KPGDHIKRPMNAYMVWSRKERRR 25
>SB_13764| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1099
Score = 28.7 bits (61), Expect = 5.3
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = +2
Query: 629 KVKMTDKPKRPMSAYMLWLNSARNR 703
K D+ KRPM+A+M+W R +
Sbjct: 782 KANSADRVKRPMNAFMVWSRERRRK 806
>SB_32644| Best HMM Match : zf-C2H2 (HMM E-Value=0)
Length = 365
Score = 27.9 bits (59), Expect = 9.2
Identities = 16/50 (32%), Positives = 24/50 (48%)
Frame = +1
Query: 514 VFSRGHGSAFSLRAAHSLRLQFGCVPVQKLFQNFCHQEKSQNDGQAEASY 663
VFS HG +R +HS R F C+ K F + E+ ++ E S+
Sbjct: 204 VFSTPHGLEVHVRRSHSGRRPFECLTCGKTFGHSVSLEQHKSIHTNEKSF 253
>SB_3516| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 642
Score = 27.9 bits (59), Expect = 9.2
Identities = 10/21 (47%), Positives = 15/21 (71%)
Frame = +2
Query: 641 TDKPKRPMSAYMLWLNSARNR 703
T++ KRPM+A+M+W R R
Sbjct: 363 TERIKRPMNAFMVWAQVERRR 383
>SB_7613| Best HMM Match : DNA_pol3_beta (HMM E-Value=4.9)
Length = 641
Score = 27.9 bits (59), Expect = 9.2
Identities = 9/28 (32%), Positives = 19/28 (67%)
Frame = -2
Query: 640 HFDFFPDGKNFEIIFELVHNQTVDVENV 557
H DFF DG ++ ++ H++ +DV+++
Sbjct: 579 HIDFFHDGNDYFLVVIDSHSKWIDVQHI 606
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,095,480
Number of Sequences: 59808
Number of extensions: 507374
Number of successful extensions: 1131
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1047
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1131
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2010148439
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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