Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30093
(743 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
M13934-2|AAB59505.1| 151|Homo sapiens ribosomal protein S14 pro... 148 2e-35
BC091474-1|AAH91474.1| 151|Homo sapiens ribosomal protein S14 p... 148 2e-35
BC020515-1|AAH20515.1| 151|Homo sapiens ribosomal protein S14 p... 148 2e-35
BC006784-1|AAH06784.1| 151|Homo sapiens ribosomal protein S14 p... 148 2e-35
BC003401-1|AAH03401.1| 151|Homo sapiens ribosomal protein S14 p... 148 2e-35
BC001126-1|AAH01126.1| 151|Homo sapiens ribosomal protein S14 p... 148 2e-35
BC072682-1|AAH72682.1| 170|Homo sapiens similar to ribosomal pr... 140 6e-33
M86737-1|AAA58660.1| 709|Homo sapiens high mobility group box p... 41 0.005
BC091486-1|AAH91486.1| 633|Homo sapiens SSRP1 protein protein. 41 0.005
BC005116-1|AAH05116.1| 709|Homo sapiens structure specific reco... 41 0.005
>M13934-2|AAB59505.1| 151|Homo sapiens ribosomal protein S14
protein.
Length = 151
Score = 148 bits (358), Expect = 2e-35
Identities = 70/90 (77%), Positives = 77/90 (85%)
Frame = -2
Query: 526 PEKKQSAKEEVQVTLGPQHLVGETVFGVAHIFASFNDTFVHVTDLSGRETIARVTGGMKV 347
P K + KEE ++LGPQ GE VFGV HIFASFNDTFVHVTDLSG+ETI RVTGGMKV
Sbjct: 3 PRKGKEKKEEQVISLGPQVAEGENVFGVCHIFASFNDTFVHVTDLSGKETICRVTGGMKV 62
Query: 346 KADRDEASPYAAMLAAQDVAEKCKTLGITA 257
KADRDE+SPYAAMLAAQDVA++CK LGITA
Sbjct: 63 KADRDESSPYAAMLAAQDVAQRCKELGITA 92
Score = 46.8 bits (106), Expect = 8e-05
Identities = 26/48 (54%), Positives = 27/48 (56%)
Frame = -1
Query: 257 LHIKLRAXXXXXXXXXXXGAQXXXXXXXXXSMKIGRIEDVTPVPSDST 114
LHIKLRA GAQ MKIGRIEDVTP+PSDST
Sbjct: 93 LHIKLRATGGNRTKTPGPGAQSALRALARSGMKIGRIEDVTPIPSDST 140
>BC091474-1|AAH91474.1| 151|Homo sapiens ribosomal protein S14
protein.
Length = 151
Score = 148 bits (358), Expect = 2e-35
Identities = 70/90 (77%), Positives = 77/90 (85%)
Frame = -2
Query: 526 PEKKQSAKEEVQVTLGPQHLVGETVFGVAHIFASFNDTFVHVTDLSGRETIARVTGGMKV 347
P K + KEE ++LGPQ GE VFGV HIFASFNDTFVHVTDLSG+ETI RVTGGMKV
Sbjct: 3 PRKGKEKKEEQVISLGPQVAEGENVFGVCHIFASFNDTFVHVTDLSGKETICRVTGGMKV 62
Query: 346 KADRDEASPYAAMLAAQDVAEKCKTLGITA 257
KADRDE+SPYAAMLAAQDVA++CK LGITA
Sbjct: 63 KADRDESSPYAAMLAAQDVAQRCKELGITA 92
Score = 46.8 bits (106), Expect = 8e-05
Identities = 26/48 (54%), Positives = 27/48 (56%)
Frame = -1
Query: 257 LHIKLRAXXXXXXXXXXXGAQXXXXXXXXXSMKIGRIEDVTPVPSDST 114
LHIKLRA GAQ MKIGRIEDVTP+PSDST
Sbjct: 93 LHIKLRATGGNRTKTPGPGAQSALRALARSGMKIGRIEDVTPIPSDST 140
>BC020515-1|AAH20515.1| 151|Homo sapiens ribosomal protein S14
protein.
Length = 151
Score = 148 bits (358), Expect = 2e-35
Identities = 70/90 (77%), Positives = 77/90 (85%)
Frame = -2
Query: 526 PEKKQSAKEEVQVTLGPQHLVGETVFGVAHIFASFNDTFVHVTDLSGRETIARVTGGMKV 347
P K + KEE ++LGPQ GE VFGV HIFASFNDTFVHVTDLSG+ETI RVTGGMKV
Sbjct: 3 PRKGKEKKEEQVISLGPQVAEGENVFGVCHIFASFNDTFVHVTDLSGKETICRVTGGMKV 62
Query: 346 KADRDEASPYAAMLAAQDVAEKCKTLGITA 257
KADRDE+SPYAAMLAAQDVA++CK LGITA
Sbjct: 63 KADRDESSPYAAMLAAQDVAQRCKELGITA 92
Score = 46.8 bits (106), Expect = 8e-05
Identities = 26/48 (54%), Positives = 27/48 (56%)
Frame = -1
Query: 257 LHIKLRAXXXXXXXXXXXGAQXXXXXXXXXSMKIGRIEDVTPVPSDST 114
LHIKLRA GAQ MKIGRIEDVTP+PSDST
Sbjct: 93 LHIKLRATGGNRTKTPGPGAQSALRALARSGMKIGRIEDVTPIPSDST 140
>BC006784-1|AAH06784.1| 151|Homo sapiens ribosomal protein S14
protein.
Length = 151
Score = 148 bits (358), Expect = 2e-35
Identities = 70/90 (77%), Positives = 77/90 (85%)
Frame = -2
Query: 526 PEKKQSAKEEVQVTLGPQHLVGETVFGVAHIFASFNDTFVHVTDLSGRETIARVTGGMKV 347
P K + KEE ++LGPQ GE VFGV HIFASFNDTFVHVTDLSG+ETI RVTGGMKV
Sbjct: 3 PRKGKEKKEEQVISLGPQVAEGENVFGVCHIFASFNDTFVHVTDLSGKETICRVTGGMKV 62
Query: 346 KADRDEASPYAAMLAAQDVAEKCKTLGITA 257
KADRDE+SPYAAMLAAQDVA++CK LGITA
Sbjct: 63 KADRDESSPYAAMLAAQDVAQRCKELGITA 92
Score = 46.8 bits (106), Expect = 8e-05
Identities = 26/48 (54%), Positives = 27/48 (56%)
Frame = -1
Query: 257 LHIKLRAXXXXXXXXXXXGAQXXXXXXXXXSMKIGRIEDVTPVPSDST 114
LHIKLRA GAQ MKIGRIEDVTP+PSDST
Sbjct: 93 LHIKLRATGGNRTKTPGPGAQSALRALARSGMKIGRIEDVTPIPSDST 140
>BC003401-1|AAH03401.1| 151|Homo sapiens ribosomal protein S14
protein.
Length = 151
Score = 148 bits (358), Expect = 2e-35
Identities = 70/90 (77%), Positives = 77/90 (85%)
Frame = -2
Query: 526 PEKKQSAKEEVQVTLGPQHLVGETVFGVAHIFASFNDTFVHVTDLSGRETIARVTGGMKV 347
P K + KEE ++LGPQ GE VFGV HIFASFNDTFVHVTDLSG+ETI RVTGGMKV
Sbjct: 3 PRKGKEKKEEQVISLGPQVAEGENVFGVCHIFASFNDTFVHVTDLSGKETICRVTGGMKV 62
Query: 346 KADRDEASPYAAMLAAQDVAEKCKTLGITA 257
KADRDE+SPYAAMLAAQDVA++CK LGITA
Sbjct: 63 KADRDESSPYAAMLAAQDVAQRCKELGITA 92
Score = 46.8 bits (106), Expect = 8e-05
Identities = 26/48 (54%), Positives = 27/48 (56%)
Frame = -1
Query: 257 LHIKLRAXXXXXXXXXXXGAQXXXXXXXXXSMKIGRIEDVTPVPSDST 114
LHIKLRA GAQ MKIGRIEDVTP+PSDST
Sbjct: 93 LHIKLRATGGNRTKTPGPGAQSALRALARSGMKIGRIEDVTPIPSDST 140
>BC001126-1|AAH01126.1| 151|Homo sapiens ribosomal protein S14
protein.
Length = 151
Score = 148 bits (358), Expect = 2e-35
Identities = 70/90 (77%), Positives = 77/90 (85%)
Frame = -2
Query: 526 PEKKQSAKEEVQVTLGPQHLVGETVFGVAHIFASFNDTFVHVTDLSGRETIARVTGGMKV 347
P K + KEE ++LGPQ GE VFGV HIFASFNDTFVHVTDLSG+ETI RVTGGMKV
Sbjct: 3 PRKGKEKKEEQVISLGPQVAEGENVFGVCHIFASFNDTFVHVTDLSGKETICRVTGGMKV 62
Query: 346 KADRDEASPYAAMLAAQDVAEKCKTLGITA 257
KADRDE+SPYAAMLAAQDVA++CK LGITA
Sbjct: 63 KADRDESSPYAAMLAAQDVAQRCKELGITA 92
Score = 46.8 bits (106), Expect = 8e-05
Identities = 26/48 (54%), Positives = 27/48 (56%)
Frame = -1
Query: 257 LHIKLRAXXXXXXXXXXXGAQXXXXXXXXXSMKIGRIEDVTPVPSDST 114
LHIKLRA GAQ MKIGRIEDVTP+PSDST
Sbjct: 93 LHIKLRATGGNRTKTPGPGAQSALRALARSGMKIGRIEDVTPIPSDST 140
>BC072682-1|AAH72682.1| 170|Homo sapiens similar to ribosomal
protein S14 protein.
Length = 170
Score = 140 bits (338), Expect = 6e-33
Identities = 66/90 (73%), Positives = 73/90 (81%)
Frame = -2
Query: 526 PEKKQSAKEEVQVTLGPQHLVGETVFGVAHIFASFNDTFVHVTDLSGRETIARVTGGMKV 347
P K + KEE + LGPQ GE VFGV HIFASFNDTFVHVTDLSG++TI RVTGGMKV
Sbjct: 3 PGKGKEKKEEQVINLGPQVAEGENVFGVCHIFASFNDTFVHVTDLSGKQTICRVTGGMKV 62
Query: 346 KADRDEASPYAAMLAAQDVAEKCKTLGITA 257
KADRDE+SPYAAML QDVA++CK LGI A
Sbjct: 63 KADRDESSPYAAMLTTQDVAQRCKELGIIA 92
Score = 45.2 bits (102), Expect = 3e-04
Identities = 25/48 (52%), Positives = 27/48 (56%)
Frame = -1
Query: 257 LHIKLRAXXXXXXXXXXXGAQXXXXXXXXXSMKIGRIEDVTPVPSDST 114
LHI+LRA GAQ MKIGRIEDVTP+PSDST
Sbjct: 93 LHIQLRATGGNRTKTLGPGAQSALRALACSGMKIGRIEDVTPIPSDST 140
>M86737-1|AAA58660.1| 709|Homo sapiens high mobility group box
protein.
Length = 709
Score = 40.7 bits (91), Expect = 0.005
Identities = 17/26 (65%), Positives = 21/26 (80%)
Frame = +2
Query: 626 KKVKMTDKPKRPMSAYMLWLNSARNR 703
KK K + PKRPMSAYMLWLN++R +
Sbjct: 539 KKGKDPNAPKRPMSAYMLWLNASREK 564
>BC091486-1|AAH91486.1| 633|Homo sapiens SSRP1 protein protein.
Length = 633
Score = 40.7 bits (91), Expect = 0.005
Identities = 17/26 (65%), Positives = 21/26 (80%)
Frame = +2
Query: 626 KKVKMTDKPKRPMSAYMLWLNSARNR 703
KK K + PKRPMSAYMLWLN++R +
Sbjct: 539 KKGKDPNAPKRPMSAYMLWLNASREK 564
>BC005116-1|AAH05116.1| 709|Homo sapiens structure specific
recognition protein 1 protein.
Length = 709
Score = 40.7 bits (91), Expect = 0.005
Identities = 17/26 (65%), Positives = 21/26 (80%)
Frame = +2
Query: 626 KKVKMTDKPKRPMSAYMLWLNSARNR 703
KK K + PKRPMSAYMLWLN++R +
Sbjct: 539 KKGKDPNAPKRPMSAYMLWLNASREK 564
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 110,050,454
Number of Sequences: 237096
Number of extensions: 2541029
Number of successful extensions: 6108
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5385
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6102
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8903143626
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -