Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30093
         (743 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g11510.1 68416.m01403 40S ribosomal protein S14 (RPS14B) simi...   140   1e-33
At3g52580.1 68416.m05790 40S ribosomal protein S14 (RPS14C) ribo...   139   2e-33
At2g36160.1 68415.m04438 40S ribosomal protein S14 (RPS14A)           139   2e-33
At1g31817.1 68414.m03907 chloroplast 30S ribosomal protein S11, ...    33   0.20 
At4g11080.1 68417.m01800 high mobility group (HMG1/2) family pro...    31   1.1  
At4g25220.1 68417.m03629 transporter, putative similar to glycer...    28   5.7  
At3g56940.1 68416.m06334 dicarboxylate diiron protein, putative ...    28   7.5  
At5g49450.1 68418.m06118 bZIP family transcription factor simila...    27   9.9  
At2g33250.1 68415.m04073 expressed protein                             27   9.9  

>At3g11510.1 68416.m01403 40S ribosomal protein S14 (RPS14B) similar
           to 40S ribosomal protein S14 GB:P19950 [Zea mays]
          Length = 150

 Score =  140 bits (338), Expect = 1e-33
 Identities = 66/89 (74%), Positives = 78/89 (87%), Gaps = 1/89 (1%)
 Frame = -2

Query: 520 KKQSAKEEVQ-VTLGPQHLVGETVFGVAHIFASFNDTFVHVTDLSGRETIARVTGGMKVK 344
           K+++ + +V+ VTLGP    GE VFGV HIFASFNDTF+HVTDLSGRET+ R+TGGMKVK
Sbjct: 3   KRKTKEPKVETVTLGPSVREGEQVFGVVHIFASFNDTFIHVTDLSGRETLVRITGGMKVK 62

Query: 343 ADRDEASPYAAMLAAQDVAEKCKTLGITA 257
           ADRDE+SPYAAMLAAQDVA++CK LGITA
Sbjct: 63  ADRDESSPYAAMLAAQDVAQRCKELGITA 91



 Score = 44.4 bits (100), Expect = 8e-05
 Identities = 23/48 (47%), Positives = 27/48 (56%)
 Frame = -1

Query: 257 LHIKLRAXXXXXXXXXXXGAQXXXXXXXXXSMKIGRIEDVTPVPSDST 114
           +H+KLRA           GAQ          MKIGRIEDVTP+P+DST
Sbjct: 92  MHVKLRATGGNKTKTPGPGAQSALRALARSGMKIGRIEDVTPIPTDST 139


>At3g52580.1 68416.m05790 40S ribosomal protein S14 (RPS14C)
           ribosomal protein S14 -Zea mays,PIR2:A30097
          Length = 150

 Score =  139 bits (336), Expect = 2e-33
 Identities = 65/89 (73%), Positives = 78/89 (87%), Gaps = 1/89 (1%)
 Frame = -2

Query: 520 KKQSAKEEVQ-VTLGPQHLVGETVFGVAHIFASFNDTFVHVTDLSGRETIARVTGGMKVK 344
           K+++ + +V+ VTLGP    GE VFGV H+FASFNDTF+HVTDLSGRET+ R+TGGMKVK
Sbjct: 3   KRKTKEPKVENVTLGPAVREGEQVFGVVHVFASFNDTFIHVTDLSGRETLVRITGGMKVK 62

Query: 343 ADRDEASPYAAMLAAQDVAEKCKTLGITA 257
           ADRDE+SPYAAMLAAQDVA++CK LGITA
Sbjct: 63  ADRDESSPYAAMLAAQDVAQRCKELGITA 91



 Score = 44.4 bits (100), Expect = 8e-05
 Identities = 23/48 (47%), Positives = 27/48 (56%)
 Frame = -1

Query: 257 LHIKLRAXXXXXXXXXXXGAQXXXXXXXXXSMKIGRIEDVTPVPSDST 114
           +H+KLRA           GAQ          MKIGRIEDVTP+P+DST
Sbjct: 92  IHVKLRATGGNKTKTPGPGAQSALRALARSGMKIGRIEDVTPIPTDST 139


>At2g36160.1 68415.m04438 40S ribosomal protein S14 (RPS14A)
          Length = 150

 Score =  139 bits (336), Expect = 2e-33
 Identities = 67/88 (76%), Positives = 75/88 (85%)
 Frame = -2

Query: 520 KKQSAKEEVQVTLGPQHLVGETVFGVAHIFASFNDTFVHVTDLSGRETIARVTGGMKVKA 341
           K +  K +V VTLGP    GE VFGV HIFASFNDTF+HVTDLSGRET+ R+TGGMKVKA
Sbjct: 5   KTKEPKVDV-VTLGPSVREGEQVFGVVHIFASFNDTFIHVTDLSGRETLVRITGGMKVKA 63

Query: 340 DRDEASPYAAMLAAQDVAEKCKTLGITA 257
           DRDE+SPYAAMLAAQDVA++CK LGITA
Sbjct: 64  DRDESSPYAAMLAAQDVAQRCKELGITA 91



 Score = 44.4 bits (100), Expect = 8e-05
 Identities = 23/48 (47%), Positives = 27/48 (56%)
 Frame = -1

Query: 257 LHIKLRAXXXXXXXXXXXGAQXXXXXXXXXSMKIGRIEDVTPVPSDST 114
           +H+KLRA           GAQ          MKIGRIEDVTP+P+DST
Sbjct: 92  MHVKLRATGGNKTKTPGPGAQSALRALARSGMKIGRIEDVTPIPTDST 139


>At1g31817.1 68414.m03907 chloroplast 30S ribosomal protein S11,
           putative contains Pfam profile: PF00411: Ribosomal
           protein S11
          Length = 314

 Score = 33.1 bits (72), Expect = 0.20
 Identities = 18/66 (27%), Positives = 30/66 (45%)
 Frame = -2

Query: 460 ETVFGVAHIFASFNDTFVHVTDLSGRETIARVTGGMKVKADRDEASPYAAMLAAQDVAEK 281
           ET   + HI    N+TFV VTD  G       +G +       + + Y A   A+++  +
Sbjct: 190 ETNADIIHIKMLRNNTFVTVTDSKGNVKCKATSGSLPDLKGGRKMTNYTADATAENIGRR 249

Query: 280 CKTLGI 263
            K +G+
Sbjct: 250 AKAMGL 255


>At4g11080.1 68417.m01800 high mobility group (HMG1/2) family
           protein similar to SP|P40618 High mobility group protein
           HMG2A {Gallus gallus}; contains Pfam profile PF00505:
           HMG (high mobility group) box
          Length = 446

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 12/24 (50%), Positives = 18/24 (75%)
 Frame = +2

Query: 626 KKVKMTDKPKRPMSAYMLWLNSAR 697
           KK+K   KPK+P+SAY+++ N  R
Sbjct: 238 KKIKDPLKPKQPISAYLIYANERR 261


>At4g25220.1 68417.m03629 transporter, putative similar to
           glycerol-3-phosphate transporter (glycerol 3-phosphate
           permease) [Homo sapiens] GI:7543982
          Length = 504

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +1

Query: 79  YSLRPLRPPFLRVESDGTGVTSSMR 153
           Y   P+ PP +  E DGT + S+MR
Sbjct: 225 YLFLPVNPPTVEAERDGTEIDSTMR 249


>At3g56940.1 68416.m06334 dicarboxylate diiron protein, putative
           (Crd1) similar to leucine-containing zipper protein
           At103 GP:6911864; contains Pfam profile PF05447: Copper
           response defect 1 (CRD1)
          Length = 409

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = +1

Query: 574 QFGCVPVQKLFQNFCHQEKSQND 642
           +F C P+ K F+N+C  E    D
Sbjct: 239 EFQCYPIFKYFENWCQDENRHGD 261


>At5g49450.1 68418.m06118 bZIP family transcription factor similar
           to bZIP transcription factor GI:1769891 from
           [Arabidopsis thaliana]
          Length = 145

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 18/49 (36%), Positives = 29/49 (59%)
 Frame = +1

Query: 595 QKLFQNFCHQEKSQNDGQAEASYVRIHAVVKQREEQIKSENPGLRVTEI 741
           QKL ++  H E S  + + + +  R  AV KQR + +++EN GLR  +I
Sbjct: 36  QKLMEDTIH-EISSLERRIKENSERCRAV-KQRLDSVETENAGLRSEKI 82


>At2g33250.1 68415.m04073 expressed protein
          Length = 299

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 16/51 (31%), Positives = 24/51 (47%)
 Frame = +3

Query: 153 ANLHT*TSKSPKCRLSTRTRGLCFVSTSSTELYVKAVMPRVLHFSATSCAA 305
           +NLH     +P+    +R++ LCF S+ S     K +      FS   CAA
Sbjct: 19  SNLHVWRFHNPRSYPPSRSQLLCFSSSCSRVTSAKIIQLNRRRFSYKICAA 69


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,903,448
Number of Sequences: 28952
Number of extensions: 340297
Number of successful extensions: 820
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 788
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 820
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1643603136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)