Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30092
(614 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_P46781 Cluster: 40S ribosomal protein S9; n=181; Eukary... 146 5e-34
UniRef50_O15612 Cluster: 40S ribosomal protein S9; n=2; Entamoeb... 87 3e-16
UniRef50_Q011L4 Cluster: Chromosome 09 contig 1, DNA sequence; n... 79 8e-14
UniRef50_A7IAH7 Cluster: Ribosomal protein S4; n=1; Candidatus M... 76 8e-13
UniRef50_Q10KL6 Cluster: 40S ribosomal protein S9, putative; n=5... 75 2e-12
UniRef50_Q8SRW6 Cluster: 40S RIBOSOMAL PROTEIN S9; n=1; Encephal... 74 3e-12
UniRef50_Q2FT97 Cluster: 30S ribosomal protein S4P; n=2; Methano... 72 1e-11
UniRef50_Q6CM19 Cluster: Similarity; n=2; Saccharomycetaceae|Rep... 70 4e-11
UniRef50_Q3LWD1 Cluster: Ribosomal protein S9; n=1; Bigelowiella... 70 5e-11
UniRef50_P54020 Cluster: 30S ribosomal protein S4P; n=12; Archae... 68 2e-10
UniRef50_UPI0000501C59 Cluster: UPI0000501C59 related cluster; n... 65 1e-09
UniRef50_Q97B95 Cluster: 30S ribosomal protein S4P; n=5; Archaea... 64 2e-09
UniRef50_Q96YV8 Cluster: 30S ribosomal protein S4P; n=2; Sulfolo... 64 3e-09
UniRef50_Q8ZTV1 Cluster: 30S ribosomal protein S4P; n=5; Thermop... 61 2e-08
UniRef50_Q74NF7 Cluster: 30S ribosomal protein S4P; n=5; Archaea... 61 2e-08
UniRef50_A6MWA4 Cluster: Ribosomal subunit protein S9; n=3; Euth... 60 5e-08
UniRef50_Q8PV18 Cluster: 30S ribosomal protein S4P; n=8; Euryarc... 60 5e-08
UniRef50_Q0W1V5 Cluster: 30S ribosomal protein S4P; n=1; uncultu... 58 2e-07
UniRef50_A6UW05 Cluster: Ribosomal protein S4; n=1; Methanococcu... 57 3e-07
UniRef50_Q2NFZ4 Cluster: 30S ribosomal protein S4P; n=3; Methano... 56 7e-07
UniRef50_A0RY02 Cluster: 30S ribosomal protein S4P; n=3; Thermop... 52 8e-06
UniRef50_Q9SZ81 Cluster: Putative ribosomal protein; n=1; Arabid... 52 1e-05
UniRef50_Q9HQJ6 Cluster: 30S ribosomal protein S4P; n=3; Halobac... 52 1e-05
UniRef50_A0SNY6 Cluster: Ribosomal protein small subunit S9; n=1... 51 2e-05
UniRef50_Q82T00 Cluster: 30S ribosomal protein S4 B; n=3; Betapr... 48 1e-04
UniRef50_A5BYX8 Cluster: Putative uncharacterized protein; n=1; ... 47 3e-04
UniRef50_O21263 Cluster: Mitochondrial ribosomal protein S4; n=1... 47 3e-04
UniRef50_Q8RE43 Cluster: 30S ribosomal protein S4; n=6; Bacteria... 47 4e-04
UniRef50_Q4AEQ5 Cluster: Ribosomal protein S4:RNA-binding S4; n=... 46 5e-04
UniRef50_P48270 Cluster: Chloroplast 30S ribosomal protein S4; n... 46 0.001
UniRef50_Q6AP44 Cluster: 30S ribosomal protein S4; n=37; Bacteri... 45 0.001
UniRef50_A5KQD5 Cluster: Putative uncharacterized protein; n=2; ... 45 0.002
UniRef50_Q0D4G1 Cluster: Os07g0628300 protein; n=2; Oryza sativa... 45 0.002
UniRef50_P59129 Cluster: 30S ribosomal protein S4; n=19; Bacteri... 45 0.002
UniRef50_O66484 Cluster: 30S ribosomal protein S4; n=17; Bacteri... 43 0.005
UniRef50_A6DLN6 Cluster: 30S ribosomal protein S4; n=1; Lentisph... 42 0.009
UniRef50_Q0TMU2 Cluster: 30S ribosomal protein S4 B; n=13; Clost... 42 0.009
UniRef50_P58134 Cluster: Plastid 30S ribosomal protein S4; n=2; ... 42 0.009
UniRef50_Q5YGE8 Cluster: Small ribosomal protein 4; n=1; Calycul... 42 0.015
UniRef50_A5USG3 Cluster: Ribosomal protein S4; n=4; Chloroflexac... 41 0.020
UniRef50_Q74K05 Cluster: 30S ribosomal protein S4; n=107; cellul... 41 0.027
UniRef50_A3HXD0 Cluster: 30S ribosomal protein S4; n=1; Algoriph... 40 0.036
UniRef50_A4EA85 Cluster: Putative uncharacterized protein; n=1; ... 40 0.047
UniRef50_Q7YLR6 Cluster: Small ribosomal protein 4; n=10; Conife... 40 0.047
UniRef50_A7QX06 Cluster: Chromosome chr14 scaffold_211, whole ge... 40 0.047
UniRef50_Q9G884 Cluster: Ribosomal protein S4; n=1; Malawimonas ... 40 0.047
UniRef50_Q2JUD6 Cluster: 30S ribosomal protein S4; n=2041; cellu... 40 0.047
UniRef50_Q1CXF1 Cluster: 30S ribosomal protein S4 B; n=2; Cystob... 40 0.047
UniRef50_Q5DQ32 Cluster: Ribosomal protein small subunit 4; n=6;... 40 0.062
UniRef50_P56799 Cluster: Chloroplast 30S ribosomal protein S4; n... 39 0.11
UniRef50_Q2GDI3 Cluster: 30S ribosomal protein S4; n=8; Ricketts... 38 0.19
UniRef50_A0JX91 Cluster: 30S ribosomal protein S4; n=20; Actinob... 38 0.19
UniRef50_Q9XQQ7 Cluster: Apicoplast 30S ribosomal protein S4; n=... 38 0.19
UniRef50_Q06J34 Cluster: Chloroplast 30S ribosomal protein S4; n... 38 0.19
UniRef50_Q7NAV0 Cluster: 30S ribosomal protein S4; n=11; Mollicu... 38 0.25
UniRef50_Q92BB2 Cluster: 30S ribosomal protein S4; n=35; Bacteri... 38 0.25
UniRef50_O51560 Cluster: 30S ribosomal protein S4; n=3; Borrelia... 38 0.25
UniRef50_Q9X1I3 Cluster: 30S ribosomal protein S4; n=14; Bacteri... 37 0.33
UniRef50_Q9XPI8 Cluster: Ribosomal protein S4; n=2; Dictyosteliu... 36 0.58
UniRef50_A7AVJ4 Cluster: U3 small nucleolar ribonucleoprotein pr... 36 0.58
UniRef50_Q5LNM2 Cluster: 30S ribosomal protein S4; n=86; Bacteri... 36 0.58
UniRef50_Q06SJ3 Cluster: Chloroplast 30S ribosomal protein S4; n... 36 0.58
UniRef50_P36128 Cluster: Putative uncharacterized protein YKR033... 36 0.77
UniRef50_Q2JFE9 Cluster: 30S ribosomal protein S4; n=25; Bacteri... 36 0.77
UniRef50_Q6MIP0 Cluster: 30S ribosomal protein S4 B; n=1; Bdello... 36 1.0
UniRef50_O22029 Cluster: Chloroplast 30S ribosomal protein S4; n... 36 1.0
UniRef50_Q9NV31 Cluster: U3 small nucleolar ribonucleoprotein pr... 36 1.0
UniRef50_Q9Z5U7 Cluster: 30S ribosomal protein S4; n=5; Alphapro... 35 1.3
UniRef50_A6YGA2 Cluster: Ribosomal protein S4; n=30; cellular or... 35 1.8
UniRef50_Q8IKM0 Cluster: Ribosomal protein S4, putative; n=1; Pl... 35 1.8
UniRef50_Q17AL1 Cluster: U3 small nucleolar ribonucleoprotein pr... 35 1.8
UniRef50_Q8SRU8 Cluster: U3 SMALL NUCLEOLAR RIBONUCLEOPROTEIN; n... 35 1.8
UniRef50_O01513 Cluster: Putative 40S ribosomal protein S4-like;... 35 1.8
UniRef50_A7RWV6 Cluster: Predicted protein; n=1; Nematostella ve... 34 2.3
UniRef50_P46743 Cluster: Mitochondrial ribosomal protein S4; n=1... 34 2.3
UniRef50_UPI0000084740 Cluster: lethal (2) 35Bb CG31834-PA; n=1;... 34 3.1
UniRef50_UPI0000498936 Cluster: U3 small nucleolar ribonucleopro... 33 4.1
UniRef50_Q4P328 Cluster: Helicase SWR1; n=1; Ustilago maydis|Rep... 33 4.1
UniRef50_Q5KLM6 Cluster: Nam9 protein, mitochondrial, putative; ... 33 5.4
UniRef50_UPI0000E48FC4 Cluster: PREDICTED: similar to ENSANGP000... 32 9.4
UniRef50_A2XYL0 Cluster: Putative uncharacterized protein; n=2; ... 32 9.4
>UniRef50_P46781 Cluster: 40S ribosomal protein S9; n=181;
Eukaryota|Rep: 40S ribosomal protein S9 - Homo sapiens
(Human)
Length = 194
Score = 146 bits (353), Expect = 5e-34
Identities = 69/77 (89%), Positives = 74/77 (96%)
Frame = +1
Query: 256 EKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFI 435
E +MKLDY+LGLKIEDFLERRLQTQVFK GLAKSIHHAR+LIRQRHIRVRKQVVNIPSFI
Sbjct: 89 EGKMKLDYILGLKIEDFLERRLQTQVFKLGLAKSIHHARVLIRQRHIRVRKQVVNIPSFI 148
Query: 436 VRLDSGKHIDFSLKSPF 486
VRLDS KHIDFSL+SP+
Sbjct: 149 VRLDSQKHIDFSLRSPY 165
Score = 133 bits (321), Expect = 4e-30
Identities = 61/69 (88%), Positives = 67/69 (97%)
Frame = +2
Query: 14 VFSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKD 193
V KTYVTPRRPFEK+RLDQELK+IGEYGLRNKREVWRVK+TLA+IRKAARELLTL+EKD
Sbjct: 8 VCRKTYVTPRRPFEKSRLDQELKLIGEYGLRNKREVWRVKFTLAKIRKAARELLTLDEKD 67
Query: 194 PKRLFEGNA 220
P+RLFEGNA
Sbjct: 68 PRRLFEGNA 76
>UniRef50_O15612 Cluster: 40S ribosomal protein S9; n=2; Entamoeba
histolytica|Rep: 40S ribosomal protein S9 - Entamoeba
histolytica
Length = 185
Score = 87.0 bits (206), Expect = 3e-16
Identities = 42/74 (56%), Positives = 57/74 (77%)
Frame = +1
Query: 262 QMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVR 441
Q KL++VL LK E+ LERRLQT V++ G AKSIHHAR+LIR + I+V KQVV++PSF+VR
Sbjct: 90 QNKLEFVLALKEENLLERRLQTLVYRKGFAKSIHHARVLIRGKMIKVGKQVVDVPSFLVR 149
Query: 442 LDSGKHIDFSLKSP 483
++S I + +P
Sbjct: 150 VESEPLIQLADNTP 163
Score = 78.2 bits (184), Expect = 1e-13
Identities = 34/67 (50%), Positives = 48/67 (71%)
Frame = +2
Query: 20 SKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDPK 199
S TY TP+ P+E+ R D ELK++G++GL+NK+E+ RV Y L +R A+ +L + KDPK
Sbjct: 9 SITYKTPKVPYERERFDAELKLVGQFGLKNKKEIQRVHYMLGHMRTIAKVMLMKDAKDPK 68
Query: 200 RLFEGNA 220
RL EG A
Sbjct: 69 RLLEGAA 75
>UniRef50_Q011L4 Cluster: Chromosome 09 contig 1, DNA sequence; n=1;
Ostreococcus tauri|Rep: Chromosome 09 contig 1, DNA
sequence - Ostreococcus tauri
Length = 293
Score = 79.0 bits (186), Expect = 8e-14
Identities = 43/81 (53%), Positives = 48/81 (59%)
Frame = -1
Query: 545 SATLSLAEVLPLARPGRPPPNGDFREKSMCLPESRRTINDGMFTTCLRTRICLCRIKILA 366
S + A L RPGRPPP+G+ KSMC S RT G FT CL TRI RIK A
Sbjct: 38 SPPAAAAARLRFTRPGRPPPSGELSAKSMCFWLSVRTKKLGTFTICLPTRIWRWRIKTRA 97
Query: 365 *WMDFARPALNTCVCRRRSKK 303
D ARP+L T VC+RRSKK
Sbjct: 98 WCTDLARPSLKTSVCKRRSKK 118
Score = 34.7 bits (76), Expect = 1.8
Identities = 18/35 (51%), Positives = 24/35 (68%)
Frame = -2
Query: 127 APYFTLVAETVLSDDLQLLVKTCLFKRTTRCHVRL 23
AP +LVA+ L+DDLQL V+ L +RT+R RL
Sbjct: 167 APQLSLVAKAELTDDLQLGVEAILLERTSRLLERL 201
>UniRef50_A7IAH7 Cluster: Ribosomal protein S4; n=1; Candidatus
Methanoregula boonei 6A8|Rep: Ribosomal protein S4 -
Methanoregula boonei (strain 6A8)
Length = 185
Score = 75.8 bits (178), Expect = 8e-13
Identities = 33/58 (56%), Positives = 44/58 (75%)
Frame = +2
Query: 8 PSVFSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTL 181
P K+Y TP+RPFEK R+++E +++ EYGLRNKREVW+ + L + RKAARELL L
Sbjct: 4 PGKNHKSYQTPKRPFEKTRIEEETRLVIEYGLRNKREVWKAQSHLRKYRKAARELLAL 61
Score = 57.6 bits (133), Expect = 2e-07
Identities = 30/72 (41%), Positives = 43/72 (59%)
Frame = +1
Query: 271 LDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDS 450
+D VL LK+ LERRLQT V++ GLA+S AR L+ HI + + V +P ++V
Sbjct: 94 IDNVLALKVPAQLERRLQTLVYRKGLARSPKQARQLVTHGHIAIGGRRVTVPGYLVTRGE 153
Query: 451 GKHIDFSLKSPF 486
I ++ KSPF
Sbjct: 154 ETTISYAGKSPF 165
>UniRef50_Q10KL6 Cluster: 40S ribosomal protein S9, putative; n=5;
Oryza sativa|Rep: 40S ribosomal protein S9, putative -
Oryza sativa subsp. japonica (Rice)
Length = 157
Score = 74.5 bits (175), Expect = 2e-12
Identities = 37/68 (54%), Positives = 48/68 (70%)
Frame = +2
Query: 17 FSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDP 196
+ KT+ PRRP+EK R D ELK+ GEYGLR+K E+WRV +ELLTL+EK+P
Sbjct: 10 YGKTFKKPRRPYEKERPDAELKLYGEYGLRSKCELWRV-----------QELLTLDEKNP 58
Query: 197 KRLFEGNA 220
+R+FEG A
Sbjct: 59 RRIFEGEA 66
Score = 68.1 bits (159), Expect = 2e-10
Identities = 33/52 (63%), Positives = 37/52 (71%)
Frame = +1
Query: 241 YWSTGEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHI 396
Y GE Q KLDYVL L +E+FL+ RLQT VFK G KSIHH +LIRQ HI
Sbjct: 74 YGLLGEGQNKLDYVLALTVENFLQCRLQTIVFKNGTVKSIHHDHVLIRQHHI 125
>UniRef50_Q8SRW6 Cluster: 40S RIBOSOMAL PROTEIN S9; n=1;
Encephalitozoon cuniculi|Rep: 40S RIBOSOMAL PROTEIN S9 -
Encephalitozoon cuniculi
Length = 184
Score = 73.7 bits (173), Expect = 3e-12
Identities = 35/67 (52%), Positives = 49/67 (73%)
Frame = +1
Query: 271 LDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDS 450
L+ VL L I +LERRLQ +VF AGLAKS+HHAR+LI R I ++ Q+V++P F+VR D
Sbjct: 98 LNKVLDLTINHYLERRLQFRVFAAGLAKSVHHARLLIGGRCISIKDQIVDVPGFMVRADK 157
Query: 451 GKHIDFS 471
I+++
Sbjct: 158 EPLIEYN 164
Score = 56.0 bits (129), Expect = 7e-07
Identities = 26/53 (49%), Positives = 37/53 (69%)
Frame = +2
Query: 20 SKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLT 178
SK TPR PFEK RL +E +++G YGL+NK E+W ++ A+ ++ AR LLT
Sbjct: 7 SKRASTPRDPFEKERLIREAQLVGVYGLKNKHELWVMEKIFAKDKERARILLT 59
>UniRef50_Q2FT97 Cluster: 30S ribosomal protein S4P; n=2;
Methanomicrobiales|Rep: 30S ribosomal protein S4P -
Methanospirillum hungatei (strain JF-1 / DSM 864)
Length = 181
Score = 71.7 bits (168), Expect = 1e-11
Identities = 31/59 (52%), Positives = 43/59 (72%)
Frame = +2
Query: 8 PSVFSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLE 184
P K Y TP+RPFE +R+++E +++ EYGLRNKREVW K L + RKAARE++ L+
Sbjct: 4 PGKNHKQYQTPKRPFELSRIEEETRLVIEYGLRNKREVWIAKGALRKYRKAAREIIALQ 62
Score = 56.0 bits (129), Expect = 7e-07
Identities = 29/71 (40%), Positives = 41/71 (57%)
Frame = +1
Query: 271 LDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDS 450
+D VL LK+E L+RRLQTQV++ G A+S AR I HI + + V IP + V
Sbjct: 94 IDDVLALKVEQQLDRRLQTQVYRRGFARSPKQARQFITHGHIAIGGRRVTIPGYTVSAKE 153
Query: 451 GKHIDFSLKSP 483
+ I ++ SP
Sbjct: 154 QEEISYAGSSP 164
>UniRef50_Q6CM19 Cluster: Similarity; n=2; Saccharomycetaceae|Rep:
Similarity - Kluyveromyces lactis (Yeast) (Candida
sphaerica)
Length = 246
Score = 70.1 bits (164), Expect = 4e-11
Identities = 34/77 (44%), Positives = 51/77 (66%)
Frame = -3
Query: 486 EWRFQREVNVLARVQAHNK*WDVHNLLADTNMPLPDQNSGMMDGLRQASFEHLRLQTTLQ 307
EWR EVNVL R Q+ ++ WDV +LL ++N+ L DQ+S +++ L Q L LQ++ Q
Sbjct: 28 EWRGSSEVNVLLRFQSDHERWDVDDLLTNSNVSLGDQDSSVVNRLGQTQLVDLGLQSSFQ 87
Query: 306 EVLNLQTKHIIEFHLFF 256
E+ NLQ++ II+ L F
Sbjct: 88 EIFNLQSQDIIQLLLVF 104
>UniRef50_Q3LWD1 Cluster: Ribosomal protein S9; n=1; Bigelowiella
natans|Rep: Ribosomal protein S9 - Bigelowiella natans
(Pedinomonas minutissima) (Chlorarachnion sp.(strain
CCMP 621))
Length = 180
Score = 69.7 bits (163), Expect = 5e-11
Identities = 34/70 (48%), Positives = 48/70 (68%)
Frame = +1
Query: 271 LDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDS 450
L+ ++ + + L RRLQT V + L+K+IH ARILI +HI+V+ Q+VN PSF+VR D+
Sbjct: 95 LESIIKIDLRSILSRRLQTVVKQLKLSKTIHEARILIMHKHIQVKNQIVNKPSFLVRKDN 154
Query: 451 GKHIDFSLKS 480
I FSL S
Sbjct: 155 EIFISFSLNS 164
Score = 60.5 bits (140), Expect = 3e-08
Identities = 24/58 (41%), Positives = 42/58 (72%)
Frame = +2
Query: 17 FSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEK 190
+SK + P+ P+EK RL E+++I +GL+NKRE+WR ++ L+++RK A +L+ + K
Sbjct: 10 YSKIWNRPKNPYEKLRLCNEIRMINLFGLKNKRELWRTQFFLSKLRKVAEKLIYKKAK 67
>UniRef50_P54020 Cluster: 30S ribosomal protein S4P; n=12;
Archaea|Rep: 30S ribosomal protein S4P - Methanococcus
jannaschii
Length = 187
Score = 67.7 bits (158), Expect = 2e-10
Identities = 35/72 (48%), Positives = 46/72 (63%)
Frame = +1
Query: 271 LDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDS 450
LD VL L +ED LERRLQT VF+ GLA++ AR LI HI V +VV PS++V ++
Sbjct: 91 LDDVLSLTVEDILERRLQTLVFRKGLARTPRQARQLIVHGHIAVNGRVVTAPSYMVTVEE 150
Query: 451 GKHIDFSLKSPF 486
I ++ SPF
Sbjct: 151 EDKISYAKNSPF 162
Score = 58.0 bits (134), Expect = 2e-07
Identities = 24/54 (44%), Positives = 37/54 (68%)
Frame = +2
Query: 17 FSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLT 178
F KTY TP P+ K R+++E ++ +YGLR KREVW+ + L + R+ AR L++
Sbjct: 8 FKKTYETPNHPWIKERIEREKELCRKYGLRRKREVWKAETILRKYRRQARRLIS 61
>UniRef50_UPI0000501C59 Cluster: UPI0000501C59 related cluster; n=1;
Rattus norvegicus|Rep: UPI0000501C59 UniRef100 entry -
Rattus norvegicus
Length = 199
Score = 65.3 bits (152), Expect = 1e-09
Identities = 35/64 (54%), Positives = 44/64 (68%)
Frame = +1
Query: 277 YVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDSGK 456
+ GL+I F E++LQTQVF+ L KSI HA +L+ HIR+ KQVV+I F V LDS K
Sbjct: 102 WAFGLRIY-FSEKQLQTQVFELVLDKSIRHACVLLCHCHIRIGKQVVDIAFFFVGLDSRK 160
Query: 457 HIDF 468
H DF
Sbjct: 161 HTDF 164
Score = 48.0 bits (109), Expect = 2e-04
Identities = 24/35 (68%), Positives = 27/35 (77%), Gaps = 1/35 (2%)
Frame = +2
Query: 116 EVWRVKYTLARIRKAARE-LLTLEEKDPKRLFEGN 217
EVWRVK+TL +IRKA E LL L EKDP+ LFE N
Sbjct: 41 EVWRVKFTLTKIRKAFWELLLLLNEKDPRYLFEDN 75
>UniRef50_Q97B95 Cluster: 30S ribosomal protein S4P; n=5;
Archaea|Rep: 30S ribosomal protein S4P - Thermoplasma
volcanium
Length = 200
Score = 64.5 bits (150), Expect = 2e-09
Identities = 29/55 (52%), Positives = 38/55 (69%)
Frame = +2
Query: 8 PSVFSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAAREL 172
P K Y TPR P+EK R+D+E KI+ +YGL+NKRE+WR + L+ IR AR L
Sbjct: 4 PKFHHKKYSTPRHPWEKDRIDEENKILVKYGLKNKREIWRSEAMLSSIRSQARYL 58
Score = 52.0 bits (119), Expect = 1e-05
Identities = 31/71 (43%), Positives = 38/71 (53%)
Frame = +1
Query: 271 LDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDS 450
LD VL L +E+ L+RRLQT VFK LA S AR LI HI V + V +P +V
Sbjct: 92 LDDVLSLTVENILDRRLQTIVFKKNLALSEKQARQLITHGHITVNGRRVTVPGMLVEAQY 151
Query: 451 GKHIDFSLKSP 483
I + SP
Sbjct: 152 EDTIAYYENSP 162
>UniRef50_Q96YV8 Cluster: 30S ribosomal protein S4P; n=2;
Sulfolobaceae|Rep: 30S ribosomal protein S4P -
Sulfolobus tokodaii
Length = 177
Score = 63.7 bits (148), Expect = 3e-09
Identities = 35/72 (48%), Positives = 45/72 (62%)
Frame = +1
Query: 271 LDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDS 450
LD +LGL E++LERRLQT V+K GLA++I+ AR LI HI + + V P +IV
Sbjct: 90 LDDILGLNEENYLERRLQTIVYKKGLARTIYQARQLIVHGHIAIGGRRVTSPGYIVMRGE 149
Query: 451 GKHIDFSLKSPF 486
IDF SPF
Sbjct: 150 EDLIDFYPTSPF 161
Score = 48.8 bits (111), Expect = 1e-04
Identities = 22/58 (37%), Positives = 34/58 (58%)
Frame = +2
Query: 8 PSVFSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTL 181
P + + P P+ + L++E +IG+YGLRNKRE+W + + + R AR LL L
Sbjct: 4 PKKSRRKWEGPGHPWIRINLEKEQVLIGKYGLRNKRELWLAQTIIRKFRHQARSLLAL 61
>UniRef50_Q8ZTV1 Cluster: 30S ribosomal protein S4P; n=5;
Thermoproteaceae|Rep: 30S ribosomal protein S4P -
Pyrobaculum aerophilum
Length = 159
Score = 61.3 bits (142), Expect = 2e-08
Identities = 30/61 (49%), Positives = 40/61 (65%)
Frame = +1
Query: 256 EKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFI 435
+ ++LD +L L + LERRLQT V++ GLAKSIHHAR LI H+ V + V P F+
Sbjct: 87 DPNVQLDRILSLDVRAILERRLQTIVYRMGLAKSIHHARQLIVHGHVAVAGRRVTSPGFL 146
Query: 436 V 438
V
Sbjct: 147 V 147
Score = 50.4 bits (115), Expect = 3e-05
Identities = 25/55 (45%), Positives = 37/55 (67%), Gaps = 2/55 (3%)
Frame = +2
Query: 38 PRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELL--TLEEKDP 196
P++ + K L +EL+++GEYGLRNK+E+W + L I + AR LL T EE+ P
Sbjct: 16 PKKIWNKQLLLEELQLMGEYGLRNKKELWLARARLKWITRRARSLLSMTAEERAP 70
>UniRef50_Q74NF7 Cluster: 30S ribosomal protein S4P; n=5;
Archaea|Rep: 30S ribosomal protein S4P - Nanoarchaeum
equitans
Length = 180
Score = 61.3 bits (142), Expect = 2e-08
Identities = 32/72 (44%), Positives = 46/72 (63%)
Frame = +1
Query: 268 KLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLD 447
+LD VL L ++D LERRLQT + + GLAK++ AR I HI V +VV+ PS++V+ +
Sbjct: 87 ELDDVLDLTVKDVLERRLQTMLVRKGLAKTMKQARQFIVHGHIMVNGEVVDAPSYLVKKE 146
Query: 448 SGKHIDFSLKSP 483
I+F SP
Sbjct: 147 EEDKIEFVPFSP 158
Score = 41.5 bits (93), Expect = 0.015
Identities = 20/50 (40%), Positives = 32/50 (64%)
Frame = +2
Query: 38 PRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEE 187
P P++K RL E +++ EYGL+NKRE+W + T+AR +A L ++
Sbjct: 11 PSHPWQKQRLIIEKRLMKEYGLKNKRELW-IAETIARKWRAYARYLNAKQ 59
>UniRef50_A6MWA4 Cluster: Ribosomal subunit protein S9; n=3;
Eutheria|Rep: Ribosomal subunit protein S9 - Trichechus
manatus latirostris
Length = 30
Score = 59.7 bits (138), Expect = 5e-08
Identities = 26/30 (86%), Positives = 30/30 (100%)
Frame = +2
Query: 119 VWRVKYTLARIRKAARELLTLEEKDPKRLF 208
VWRVK+TLA+IRKAARELLTL+EKDP+RLF
Sbjct: 1 VWRVKFTLAKIRKAARELLTLDEKDPRRLF 30
>UniRef50_Q8PV18 Cluster: 30S ribosomal protein S4P; n=8;
Euryarchaeota|Rep: 30S ribosomal protein S4P -
Methanosarcina mazei (Methanosarcina frisia)
Length = 219
Score = 59.7 bits (138), Expect = 5e-08
Identities = 26/56 (46%), Positives = 38/56 (67%)
Frame = +2
Query: 8 PSVFSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELL 175
P SK+Y TPR P+++AR+ E++++ YGLRNK+EVW+ L R AR+LL
Sbjct: 4 PGKKSKSYETPRHPWQEARMAAEVQLVKAYGLRNKKEVWKAASMLRMYRSEARKLL 59
Score = 58.4 bits (135), Expect = 1e-07
Identities = 29/71 (40%), Positives = 41/71 (57%)
Frame = +1
Query: 271 LDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDS 450
+D +L LK E+ LERRLQTQV + GLA+++ AR I HI + + IP +V +
Sbjct: 98 VDDILSLKTENILERRLQTQVLRLGLARTVIQARQFITHGHIAINGRKATIPGMLVSKED 157
Query: 451 GKHIDFSLKSP 483
HI + SP
Sbjct: 158 EMHIGYYGSSP 168
>UniRef50_Q0W1V5 Cluster: 30S ribosomal protein S4P; n=1; uncultured
methanogenic archaeon RC-I|Rep: 30S ribosomal protein
S4P - Uncultured methanogenic archaeon RC-I
Length = 205
Score = 57.6 bits (133), Expect = 2e-07
Identities = 25/56 (44%), Positives = 35/56 (62%)
Frame = +2
Query: 8 PSVFSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELL 175
P K Y TP P++KAR+D+E ++ +YGLRNK+ VW+ L + R AR LL
Sbjct: 4 PGQAKKLYDTPNHPWQKARIDEETSLVKKYGLRNKKSVWKHASDLRKYRSNARALL 59
Score = 56.0 bits (129), Expect = 7e-07
Identities = 26/76 (34%), Positives = 44/76 (57%)
Frame = +1
Query: 256 EKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFI 435
++ KL+ VL LK++D +ERRLQT +++ G A SI AR I HI + + + +P ++
Sbjct: 91 KEDAKLEDVLALKVDDIMERRLQTIIYRKGFANSIKQARQFIVHGHISLNGRKITVPGYL 150
Query: 436 VRLDSGKHIDFSLKSP 483
V + + + SP
Sbjct: 151 VLKSEEDMLSYYVGSP 166
>UniRef50_A6UW05 Cluster: Ribosomal protein S4; n=1; Methanococcus
aeolicus Nankai-3|Rep: Ribosomal protein S4 -
Methanococcus aeolicus Nankai-3
Length = 177
Score = 57.2 bits (132), Expect = 3e-07
Identities = 32/71 (45%), Positives = 40/71 (56%)
Frame = +1
Query: 271 LDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDS 450
LD VL L +E LERRLQT VF+ GLA + AR I HI V + +N PS++V L
Sbjct: 90 LDDVLSLNLESILERRLQTLVFRKGLANTPKQARQFIVHGHIAVNGKKINAPSYLVPLVE 149
Query: 451 GKHIDFSLKSP 483
I + SP
Sbjct: 150 EDAISYMPNSP 160
Score = 54.4 bits (125), Expect = 2e-06
Identities = 23/57 (40%), Positives = 37/57 (64%)
Frame = +2
Query: 8 PSVFSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLT 178
P SKTY TP P+ R+ QE ++ +YGL NK+E+W+++ L R+ AR+L++
Sbjct: 4 PRRLSKTYDTPNHPWIGERIKQERELSNKYGLSNKKEIWKMETRLRTFRRQARKLIS 60
>UniRef50_Q2NFZ4 Cluster: 30S ribosomal protein S4P; n=3;
Methanobacteriaceae|Rep: 30S ribosomal protein S4P -
Methanosphaera stadtmanae (strain DSM 3091)
Length = 182
Score = 56.0 bits (129), Expect = 7e-07
Identities = 27/67 (40%), Positives = 40/67 (59%)
Frame = +1
Query: 268 KLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLD 447
KL+ VL L +ED L RRLQ+ VFK GL+ + AR+ + HI + + +N P +V
Sbjct: 88 KLEEVLDLNVEDILRRRLQSLVFKRGLSHTAKEARLFVVHGHITLNGKKINAPGHLVEKA 147
Query: 448 SGKHIDF 468
++IDF
Sbjct: 148 DEENIDF 154
Score = 49.2 bits (112), Expect = 8e-05
Identities = 19/54 (35%), Positives = 35/54 (64%)
Frame = +2
Query: 23 KTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLE 184
K Y TP P+ R+ +E ++ +YGL+NK+E+W+ + + R R+ AR +L ++
Sbjct: 9 KQYDTPSHPWNADRIKEENRLANKYGLKNKKEIWKAESRVKRYRRDARIILGMD 62
>UniRef50_A0RY02 Cluster: 30S ribosomal protein S4P; n=3;
Thermoprotei|Rep: 30S ribosomal protein S4P -
Cenarchaeum symbiosum
Length = 205
Score = 52.4 bits (120), Expect = 8e-06
Identities = 24/65 (36%), Positives = 39/65 (60%)
Frame = +2
Query: 8 PSVFSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEE 187
P + + + P+RPF +EL+ +G +GLR KRE+W+ L+R+R AR LL L +
Sbjct: 4 PKLPRRMWRKPKRPFNYDLKMEELRTLGTFGLRTKRELWKAHTELSRVRNQARSLLALGQ 63
Query: 188 KDPKR 202
+ +R
Sbjct: 64 EVRER 68
Score = 45.2 bits (102), Expect = 0.001
Identities = 28/76 (36%), Positives = 39/76 (51%)
Frame = +1
Query: 259 KQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIV 438
K LD VL L++ D L RRLQT V K + + AR + HI + +VV IPS+ V
Sbjct: 85 KDASLDDVLNLQVNDLLGRRLQTIVMKKLGFSTPYQARQAVVHGHITISDRVVTIPSYTV 144
Query: 439 RLDSGKHIDFSLKSPF 486
++ I + S F
Sbjct: 145 YVEEEGDIKLTGGSAF 160
>UniRef50_Q9SZ81 Cluster: Putative ribosomal protein; n=1;
Arabidopsis thaliana|Rep: Putative ribosomal protein -
Arabidopsis thaliana (Mouse-ear cress)
Length = 106
Score = 52.0 bits (119), Expect = 1e-05
Identities = 24/31 (77%), Positives = 28/31 (90%)
Frame = +1
Query: 268 KLDYVLGLKIEDFLERRLQTQVFKAGLAKSI 360
KLDYVL L +E+FLERRLQT VFK+G+AKSI
Sbjct: 22 KLDYVLALTVENFLERRLQTIVFKSGMAKSI 52
>UniRef50_Q9HQJ6 Cluster: 30S ribosomal protein S4P; n=3;
Halobacteriaceae|Rep: 30S ribosomal protein S4P -
Halobacterium salinarium (Halobacterium halobium)
Length = 170
Score = 52.0 bits (119), Expect = 1e-05
Identities = 22/57 (38%), Positives = 34/57 (59%)
Frame = +2
Query: 5 VPSVFSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELL 175
+P +K Y TP P++ R+ +E ++ YGL+NK E+WR + L R+ AR LL
Sbjct: 3 LPGENTKFYETPNHPYQGERIAEESDLLSRYGLKNKEELWRAQSELRDYRREARRLL 59
Score = 50.4 bits (115), Expect = 3e-05
Identities = 26/70 (37%), Positives = 40/70 (57%)
Frame = +1
Query: 259 KQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIV 438
++ +LD VL L++ D LERRLQT V++ GLA ++ AR + H+ V V PS+ V
Sbjct: 82 EEERLDDVLSLEVTDVLERRLQTVVYREGLANTMGQARQFVSHGHVTVDGSRVTEPSYTV 141
Query: 439 RLDSGKHIDF 468
+ + F
Sbjct: 142 PVSEENTLAF 151
>UniRef50_A0SNY6 Cluster: Ribosomal protein small subunit S9; n=1;
uncultured euryarchaeote ARMAN-2|Rep: Ribosomal protein
small subunit S9 - uncultured euryarchaeote ARMAN-2
Length = 187
Score = 51.2 bits (117), Expect = 2e-05
Identities = 29/61 (47%), Positives = 37/61 (60%)
Frame = +1
Query: 256 EKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFI 435
E L+ VL + FLERRLQT VFK GLA++I AR LI I V + V+IP ++
Sbjct: 82 ENGATLEKVLDITPNAFLERRLQTVVFKKGLARTIKQARQLITHGFIAVNMKRVSIPGYM 141
Query: 436 V 438
V
Sbjct: 142 V 142
Score = 40.3 bits (90), Expect = 0.036
Identities = 18/52 (34%), Positives = 31/52 (59%)
Frame = +2
Query: 23 KTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLT 178
+ Y P+ + AR+ + +I EYGL N E+W+V+ ++R+R R LL+
Sbjct: 9 RKYDKPKDIWNLARIKADNALIAEYGLANMHELWKVQSEISRLRGNVRVLLS 60
>UniRef50_Q82T00 Cluster: 30S ribosomal protein S4 B; n=3;
Betaproteobacteria|Rep: 30S ribosomal protein S4 B -
Nitrosomonas europaea
Length = 205
Score = 48.4 bits (110), Expect = 1e-04
Identities = 27/65 (41%), Positives = 38/65 (58%)
Frame = +1
Query: 286 GLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDSGKHID 465
G + LERRL VF+AG A ++ AR L+ RH+R+ + VNIPS +RL+ G I
Sbjct: 85 GETLLQLLERRLDNVVFRAGFAPTVIAARQLVSHRHVRLNGKPVNIPS--IRLNVGDEIT 142
Query: 466 FSLKS 480
+S
Sbjct: 143 IKPES 147
>UniRef50_A5BYX8 Cluster: Putative uncharacterized protein; n=1;
Vitis vinifera|Rep: Putative uncharacterized protein -
Vitis vinifera (Grape)
Length = 187
Score = 47.2 bits (107), Expect = 3e-04
Identities = 23/53 (43%), Positives = 32/53 (60%)
Frame = +2
Query: 17 FSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELL 175
+ KT+ R + K LD ELK IG Y LR KRE+W V+ +LA ++K L+
Sbjct: 119 YGKTFKESRSSYGKGFLDAELKFIGGYELRCKRELWSVQMSLAALQKYFSSLM 171
>UniRef50_O21263 Cluster: Mitochondrial ribosomal protein S4; n=1;
Reclinomonas americana|Rep: Mitochondrial ribosomal
protein S4 - Reclinomonas americana
Length = 249
Score = 47.2 bits (107), Expect = 3e-04
Identities = 19/53 (35%), Positives = 34/53 (64%)
Frame = +1
Query: 283 LGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVR 441
+G + LERRL +++AG SI+ AR+L+ +H+ V ++ NI S++V+
Sbjct: 123 IGDNLIKMLERRLDIIIYRAGFVNSIYQARLLVNHKHVLVNNKIQNISSYLVQ 175
>UniRef50_Q8RE43 Cluster: 30S ribosomal protein S4; n=6;
Bacteria|Rep: 30S ribosomal protein S4 - Fusobacterium
nucleatum subsp. nucleatum
Length = 195
Score = 46.8 bits (106), Expect = 4e-04
Identities = 23/55 (41%), Positives = 35/55 (63%)
Frame = +1
Query: 280 VLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRL 444
V GL + ++LERRL+ V++ G AK+ AR ++ HI V + VNI SF V++
Sbjct: 77 VTGLTLIEYLERRLENVVYRLGFAKTRRQARQIVSHGHIAVNGRRVNIASFRVKV 131
>UniRef50_Q4AEQ5 Cluster: Ribosomal protein S4:RNA-binding S4; n=1;
Chlorobium phaeobacteroides BS1|Rep: Ribosomal protein
S4:RNA-binding S4 - Chlorobium phaeobacteroides BS1
Length = 134
Score = 46.4 bits (105), Expect = 5e-04
Identities = 21/51 (41%), Positives = 31/51 (60%)
Frame = +1
Query: 280 VLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSF 432
+ G + F+E RL V++ G+A + AR L+ RHI V Q+VN+PSF
Sbjct: 82 ITGENLLKFIEARLDNTVYRLGIAPTRSGARQLVSHRHITVNGQIVNVPSF 132
>UniRef50_P48270 Cluster: Chloroplast 30S ribosomal protein S4; n=2;
Chlorophyceae|Rep: Chloroplast 30S ribosomal protein S4
- Chlamydomonas reinhardtii
Length = 257
Score = 45.6 bits (103), Expect = 0.001
Identities = 25/61 (40%), Positives = 34/61 (55%)
Frame = +1
Query: 259 KQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIV 438
K K+ G + FLE RL VF+ +A +I AR LI HIRV + VNIPS++
Sbjct: 92 KAKKIKESTGQVLLQFLEMRLDNIVFRLNMAPTIPAARQLISHGHIRVNNKKVNIPSYMC 151
Query: 439 R 441
+
Sbjct: 152 K 152
>UniRef50_Q6AP44 Cluster: 30S ribosomal protein S4; n=37;
Bacteria|Rep: 30S ribosomal protein S4 - Desulfotalea
psychrophila
Length = 210
Score = 45.2 bits (102), Expect = 0.001
Identities = 26/63 (41%), Positives = 35/63 (55%)
Frame = +1
Query: 250 TGEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPS 429
T EK V G + LERRL VF+AG A S AR ++R +HI + + V+IPS
Sbjct: 78 TFEKAEAQKGVAGENLLILLERRLDNAVFRAGFASSRTQARQIVRHKHILINGKRVDIPS 137
Query: 430 FIV 438
+ V
Sbjct: 138 YQV 140
>UniRef50_A5KQD5 Cluster: Putative uncharacterized protein; n=2;
Ruminococcus|Rep: Putative uncharacterized protein -
Ruminococcus torques ATCC 27756
Length = 181
Score = 44.8 bits (101), Expect = 0.002
Identities = 20/61 (32%), Positives = 37/61 (60%)
Frame = +1
Query: 259 KQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIV 438
K +++ + G + LE RL +F+ GLA++ AR ++ +H+ V + VNIPS++V
Sbjct: 53 KAKQMEGMTGENLMRILESRLDNVIFRMGLARTRKEARQIVDHKHVLVNGKQVNIPSYLV 112
Query: 439 R 441
+
Sbjct: 113 K 113
>UniRef50_Q0D4G1 Cluster: Os07g0628300 protein; n=2; Oryza sativa
(japonica cultivar-group)|Rep: Os07g0628300 protein -
Oryza sativa subsp. japonica (Rice)
Length = 94
Score = 44.8 bits (101), Expect = 0.002
Identities = 21/28 (75%), Positives = 24/28 (85%)
Frame = +1
Query: 400 VRKQVVNIPSFIVRLDSGKHIDFSLKSP 483
V +Q+VNIPSFIVRL+S KHI FSL SP
Sbjct: 27 VGRQLVNIPSFIVRLESEKHIAFSLTSP 54
>UniRef50_P59129 Cluster: 30S ribosomal protein S4; n=19;
Bacteria|Rep: 30S ribosomal protein S4 - Chlorobium
tepidum
Length = 203
Score = 44.8 bits (101), Expect = 0.002
Identities = 27/67 (40%), Positives = 36/67 (53%)
Frame = +1
Query: 280 VLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDSGKH 459
V G + LERRL V++ G + S AR L+ H+ V + VNIPSF+V G
Sbjct: 82 VTGDNLVKMLERRLDNVVYRCGFSPSRAGARQLVTHGHMLVNGKKVNIPSFLV--SPGDQ 139
Query: 460 IDFSLKS 480
I+F KS
Sbjct: 140 IEFRQKS 146
>UniRef50_O66484 Cluster: 30S ribosomal protein S4; n=17;
Bacteria|Rep: 30S ribosomal protein S4 - Aquifex
aeolicus
Length = 211
Score = 43.2 bits (97), Expect = 0.005
Identities = 24/65 (36%), Positives = 36/65 (55%)
Frame = +1
Query: 286 GLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDSGKHID 465
G + +LERRL V++ G A + AR L+ H+ V + VNIPS++V + G I+
Sbjct: 89 GEMLLQYLERRLDNVVYRLGFASTRRQARQLVAHGHVLVNGKKVNIPSYLV--EPGDVIE 146
Query: 466 FSLKS 480
KS
Sbjct: 147 IKEKS 151
>UniRef50_A6DLN6 Cluster: 30S ribosomal protein S4; n=1;
Lentisphaera araneosa HTCC2155|Rep: 30S ribosomal
protein S4 - Lentisphaera araneosa HTCC2155
Length = 205
Score = 42.3 bits (95), Expect = 0.009
Identities = 24/64 (37%), Positives = 34/64 (53%)
Frame = +1
Query: 250 TGEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPS 429
T ++ KL V G + LE RL V++ G A + AR L+ HIR+ + NIPS
Sbjct: 75 TFDRAAKLSGVTGNNLMVLLEARLDNVVYRLGFAPTRSAARQLVGHGHIRINGRRCNIPS 134
Query: 430 FIVR 441
+ VR
Sbjct: 135 YSVR 138
>UniRef50_Q0TMU2 Cluster: 30S ribosomal protein S4 B; n=13;
Clostridiaceae|Rep: 30S ribosomal protein S4 B -
Clostridium perfringens (strain ATCC 13124 / NCTC 8237 /
Type A)
Length = 197
Score = 42.3 bits (95), Expect = 0.009
Identities = 24/58 (41%), Positives = 31/58 (53%)
Frame = +1
Query: 307 LERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDSGKHIDFSLKS 480
LE RL V++ G A SI AR ++ H V + VNIPSF RL+ G + KS
Sbjct: 86 LESRLDNMVYRMGFASSIRQARQMVNHGHFLVNGKKVNIPSF--RLNIGDEVVLREKS 141
>UniRef50_P58134 Cluster: Plastid 30S ribosomal protein S4; n=2;
Eukaryota|Rep: Plastid 30S ribosomal protein S4 -
Astasia longa (Euglenophycean alga)
Length = 206
Score = 42.3 bits (95), Expect = 0.009
Identities = 26/59 (44%), Positives = 34/59 (57%)
Frame = +1
Query: 256 EKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSF 432
+K +KL G + LE RL V++ GLA +I +R LI HI V +VVNIPSF
Sbjct: 74 KKAIKLKGSSGENLLVALEMRLDNIVYRLGLAPTIISSRQLINHGHIYVDGKVVNIPSF 132
>UniRef50_Q5YGE8 Cluster: Small ribosomal protein 4; n=1;
Calycularia crispula|Rep: Small ribosomal protein 4 -
Calycularia crispula
Length = 197
Score = 41.5 bits (93), Expect = 0.015
Identities = 19/49 (38%), Positives = 28/49 (57%)
Frame = +1
Query: 286 GLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSF 432
G + LE RL +F+ G+A +I AR L+ RHI + V+IPS+
Sbjct: 76 GQVLLQLLEMRLDNTIFRLGMASTIPGARQLVSHRHILINNDAVDIPSY 124
>UniRef50_A5USG3 Cluster: Ribosomal protein S4; n=4;
Chloroflexaceae|Rep: Ribosomal protein S4 - Roseiflexus
sp. RS-1
Length = 206
Score = 41.1 bits (92), Expect = 0.020
Identities = 23/63 (36%), Positives = 32/63 (50%)
Frame = +1
Query: 256 EKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFI 435
EK + G + LERRL V++ G A + AR L+ HI V + NIPS+
Sbjct: 75 EKAQRFPGETGAYLFILLERRLDNVVYRLGFATTRAQARQLVSHGHITVNGRKTNIPSYT 134
Query: 436 VRL 444
VR+
Sbjct: 135 VRV 137
>UniRef50_Q74K05 Cluster: 30S ribosomal protein S4; n=107; cellular
organisms|Rep: 30S ribosomal protein S4 - Lactobacillus
johnsonii
Length = 203
Score = 40.7 bits (91), Expect = 0.027
Identities = 25/65 (38%), Positives = 36/65 (55%)
Frame = +1
Query: 286 GLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDSGKHID 465
G+ LERRL V++ GLA + AR L+ HI V + V+IPS+ V++ G+ I
Sbjct: 84 GVNFMALLERRLDNIVYRLGLASTREQARQLVNHGHILVDGKRVDIPSYEVKV--GQEIS 141
Query: 466 FSLKS 480
KS
Sbjct: 142 LRDKS 146
>UniRef50_A3HXD0 Cluster: 30S ribosomal protein S4; n=1;
Algoriphagus sp. PR1|Rep: 30S ribosomal protein S4 -
Algoriphagus sp. PR1
Length = 201
Score = 40.3 bits (90), Expect = 0.036
Identities = 18/54 (33%), Positives = 32/54 (59%)
Frame = +1
Query: 280 VLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVR 441
+ G + LE RL V++ G++ + AR L+ +HI V ++VNIPS+ ++
Sbjct: 81 ITGENLLQLLEARLDNTVYRMGISPTRRGARQLVSHKHILVNGELVNIPSYSLK 134
>UniRef50_A4EA85 Cluster: Putative uncharacterized protein; n=1;
Collinsella aerofaciens ATCC 25986|Rep: Putative
uncharacterized protein - Collinsella aerofaciens ATCC
25986
Length = 198
Score = 39.9 bits (89), Expect = 0.047
Identities = 22/61 (36%), Positives = 33/61 (54%)
Frame = +1
Query: 259 KQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIV 438
K K++ V G + LE RL VF+ G A++ AR +R H V + V+IPS+ V
Sbjct: 70 KARKMNGVTGENLMIILESRLDNVVFRLGFARTRKEARQSVRHGHFTVNGKRVDIPSYRV 129
Query: 439 R 441
+
Sbjct: 130 K 130
>UniRef50_Q7YLR6 Cluster: Small ribosomal protein 4; n=10;
Coniferales|Rep: Small ribosomal protein 4 - Podocarpus
latifolius
Length = 222
Score = 39.9 bits (89), Expect = 0.047
Identities = 20/49 (40%), Positives = 30/49 (61%)
Frame = +1
Query: 286 GLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSF 432
G + LE RL +F+ G+A +I AR L+ RHI V ++V+IPS+
Sbjct: 66 GQVLLQLLEMRLDNILFRLGMALTIPGARQLVNHRHILVNGRMVDIPSY 114
>UniRef50_A7QX06 Cluster: Chromosome chr14 scaffold_211, whole
genome shotgun sequence; n=2; Vitis vinifera|Rep:
Chromosome chr14 scaffold_211, whole genome shotgun
sequence - Vitis vinifera (Grape)
Length = 276
Score = 39.9 bits (89), Expect = 0.047
Identities = 19/56 (33%), Positives = 31/56 (55%)
Frame = +1
Query: 268 KLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFI 435
K + +G + LE L +F+ G+A +I AR L+ RHI V ++V+IP +
Sbjct: 195 KAKWAIGRVLLQLLEMHLDNILFRLGMASTILGARQLVNHRHILVNGRIVDIPRLV 250
>UniRef50_Q9G884 Cluster: Ribosomal protein S4; n=1; Malawimonas
jakobiformis|Rep: Ribosomal protein S4 - Malawimonas
jakobiformis
Length = 225
Score = 39.9 bits (89), Expect = 0.047
Identities = 19/48 (39%), Positives = 28/48 (58%)
Frame = +1
Query: 301 DFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRL 444
+ LERRL T +F+ A S +AR LI HI + +VN+ S +V +
Sbjct: 107 NLLERRLDTILFRINWASSFFNARQLINHGHILINGNIVNVSSHLVNI 154
>UniRef50_Q2JUD6 Cluster: 30S ribosomal protein S4; n=2041; cellular
organisms|Rep: 30S ribosomal protein S4 - Synechococcus
sp. (strain JA-3-3Ab) (Cyanobacteria
bacteriumYellowstone A-Prime)
Length = 203
Score = 39.9 bits (89), Expect = 0.047
Identities = 21/49 (42%), Positives = 28/49 (57%)
Frame = +1
Query: 286 GLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSF 432
GL + LE RL VF+ G+A +I AR L+ HI V + V IPS+
Sbjct: 83 GLALLQMLEMRLDCIVFRLGMAPTIPAARQLVSHGHIEVNGRKVTIPSY 131
>UniRef50_Q1CXF1 Cluster: 30S ribosomal protein S4 B; n=2;
Cystobacterineae|Rep: 30S ribosomal protein S4 B -
Myxococcus xanthus (strain DK 1622)
Length = 210
Score = 39.9 bits (89), Expect = 0.047
Identities = 23/61 (37%), Positives = 33/61 (54%)
Frame = +1
Query: 286 GLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDSGKHID 465
G + LE RL + V +AGLA SI AR +R ++ V + +IPSF R+ G +
Sbjct: 89 GTVLLQLLESRLDSLVLRAGLATSIRQARQFVRHGYLHVDGKRADIPSF--RVKPGSEVR 146
Query: 466 F 468
F
Sbjct: 147 F 147
>UniRef50_Q5DQ32 Cluster: Ribosomal protein small subunit 4; n=6;
Filicales|Rep: Ribosomal protein small subunit 4 -
Asplenium trichomanes subsp. inexpectans
Length = 169
Score = 39.5 bits (88), Expect = 0.062
Identities = 19/42 (45%), Positives = 26/42 (61%)
Frame = +1
Query: 307 LERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSF 432
LE RL +F G+A +I AR L+ RHI V +V+IPS+
Sbjct: 54 LEMRLDNVLFHLGMASTIPAARQLVNHRHILVNNCIVDIPSY 95
>UniRef50_P56799 Cluster: Chloroplast 30S ribosomal protein S4;
n=1123; Embryophyta|Rep: Chloroplast 30S ribosomal
protein S4 - Arabidopsis thaliana (Mouse-ear cress)
Length = 201
Score = 38.7 bits (86), Expect = 0.11
Identities = 19/49 (38%), Positives = 29/49 (59%)
Frame = +1
Query: 286 GLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSF 432
G + LE RL +F+ G+A +I AR L+ HI V ++V+IPS+
Sbjct: 80 GQVLLQLLEMRLDNILFRLGMALTIPQARQLVNHGHILVNGRIVDIPSY 128
>UniRef50_Q2GDI3 Cluster: 30S ribosomal protein S4; n=8;
Rickettsiales|Rep: 30S ribosomal protein S4 -
Neorickettsia sennetsu (strain Miyayama)
Length = 205
Score = 37.9 bits (84), Expect = 0.19
Identities = 16/45 (35%), Positives = 30/45 (66%)
Frame = +1
Query: 307 LERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVR 441
LE R+ + ++++G+ +I AR LI +H+ V ++VNI SF ++
Sbjct: 91 LESRVSSVLYRSGMVPTIFAARQLISHKHVTVNGEIVNICSFTLK 135
>UniRef50_A0JX91 Cluster: 30S ribosomal protein S4; n=20;
Actinobacteria (class)|Rep: 30S ribosomal protein S4 -
Arthrobacter sp. (strain FB24)
Length = 208
Score = 37.9 bits (84), Expect = 0.19
Identities = 23/61 (37%), Positives = 33/61 (54%)
Frame = +1
Query: 256 EKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFI 435
E+ + + G + + LE RL V +AG A++I AR L+ RHI V V+ PSF
Sbjct: 76 EEARRTKGLTGENLIELLEMRLDALVLRAGFARTIAQARQLVVHRHILVDGIRVDRPSFR 135
Query: 436 V 438
V
Sbjct: 136 V 136
>UniRef50_Q9XQQ7 Cluster: Apicoplast 30S ribosomal protein S4; n=1;
Toxoplasma gondii|Rep: Apicoplast 30S ribosomal protein
S4 - Toxoplasma gondii
Length = 198
Score = 37.9 bits (84), Expect = 0.19
Identities = 26/66 (39%), Positives = 36/66 (54%), Gaps = 5/66 (7%)
Frame = +1
Query: 256 EKQMK--LDYVLGLKIEDFL---ERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVN 420
E Q+K Y+ LKI + + E RL +F+ G AKSI+ AR LI I + +V
Sbjct: 61 ENQIKKYFKYIKLLKIFNLIQIIELRLDATIFRLGFAKSINQARQLITHGFIFINSILVK 120
Query: 421 IPSFIV 438
PSFI+
Sbjct: 121 KPSFIL 126
>UniRef50_Q06J34 Cluster: Chloroplast 30S ribosomal protein S4; n=1;
Bigelowiella natans|Rep: Chloroplast 30S ribosomal
protein S4 - Bigelowiella natans (Pedinomonas
minutissima) (Chlorarachnion sp.(strain CCMP 621))
Length = 194
Score = 37.9 bits (84), Expect = 0.19
Identities = 19/49 (38%), Positives = 27/49 (55%)
Frame = +1
Query: 286 GLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSF 432
G K+ LE RL T +++ G ++ AR LI HI V + V+IP F
Sbjct: 75 GDKLLQLLEMRLDTLLYRTGFVPTVASARQLISHGHINVNGKKVDIPGF 123
>UniRef50_Q7NAV0 Cluster: 30S ribosomal protein S4; n=11;
Mollicutes|Rep: 30S ribosomal protein S4 - Mycoplasma
gallisepticum
Length = 207
Score = 37.5 bits (83), Expect = 0.25
Identities = 20/61 (32%), Positives = 32/61 (52%)
Frame = +1
Query: 268 KLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLD 447
K+ +L + + LE RL VF+ G A + AR L+ H+ V + +IPS ++ L
Sbjct: 82 KMSGILTMNLFRTLESRLDNLVFRMGFAPTRRGARQLVSHGHVLVNGKTFDIPSALISLG 141
Query: 448 S 450
S
Sbjct: 142 S 142
>UniRef50_Q92BB2 Cluster: 30S ribosomal protein S4; n=35;
Bacteria|Rep: 30S ribosomal protein S4 - Listeria
innocua
Length = 200
Score = 37.5 bits (83), Expect = 0.25
Identities = 24/64 (37%), Positives = 34/64 (53%)
Frame = +1
Query: 247 STGEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIP 426
+T K KL G LE+RL V++ GLA++ AR L+ HI V + V+IP
Sbjct: 70 NTFNKAGKLQGKHGENFMILLEQRLDNIVYRLGLARTRRAARQLVNHGHITVDGKRVDIP 129
Query: 427 SFIV 438
S+ V
Sbjct: 130 SYQV 133
>UniRef50_O51560 Cluster: 30S ribosomal protein S4; n=3; Borrelia
burgdorferi group|Rep: 30S ribosomal protein S4 -
Borrelia burgdorferi (Lyme disease spirochete)
Length = 209
Score = 37.5 bits (83), Expect = 0.25
Identities = 23/65 (35%), Positives = 35/65 (53%)
Frame = +1
Query: 247 STGEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIP 426
+T ++ K V G + LERR+ V++AG A S HAR ++ I + + V IP
Sbjct: 74 NTFKEAKKHHGVTGDNLLSILERRIDNVVYRAGFAISRAHARQIVSHGIIILNGRRVTIP 133
Query: 427 SFIVR 441
S I+R
Sbjct: 134 SIILR 138
>UniRef50_Q9X1I3 Cluster: 30S ribosomal protein S4; n=14;
Bacteria|Rep: 30S ribosomal protein S4 - Thermotoga
maritima
Length = 209
Score = 37.1 bits (82), Expect = 0.33
Identities = 18/45 (40%), Positives = 26/45 (57%)
Frame = +1
Query: 307 LERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVR 441
LE RL V++ G A + AR L+ H V + VNIPS+++R
Sbjct: 96 LEARLDNVVYRMGFAINRRQARQLVNHGHFLVNGKKVNIPSYLLR 140
>UniRef50_Q9XPI8 Cluster: Ribosomal protein S4; n=2; Dictyostelium
discoideum|Rep: Ribosomal protein S4 - Dictyostelium
discoideum (Slime mold)
Length = 300
Score = 36.3 bits (80), Expect = 0.58
Identities = 11/46 (23%), Positives = 30/46 (65%)
Frame = +1
Query: 307 LERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRL 444
LE+R+ + ++G +S++ AR +I +H+ V ++ ++P +++ +
Sbjct: 144 LEKRVDMVLLRSGFVRSLYEARQIINHKHLLVNGKIASLPGYMINV 189
>UniRef50_A7AVJ4 Cluster: U3 small nucleolar ribonucleoprotein
protein IMP3-like protein; n=1; Babesia bovis|Rep: U3
small nucleolar ribonucleoprotein protein IMP3-like
protein - Babesia bovis
Length = 195
Score = 36.3 bits (80), Expect = 0.58
Identities = 20/56 (35%), Positives = 29/56 (51%)
Frame = +1
Query: 304 FLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDSGKHIDFS 471
F RRL T + + + + A I Q HIRV VVNIP++ V + HI ++
Sbjct: 116 FCRRRLATVLVQRKFCEHLKQAVTYIEQGHIRVGLDVVNIPAYHVTRELEDHITWA 171
>UniRef50_Q5LNM2 Cluster: 30S ribosomal protein S4; n=86;
Bacteria|Rep: 30S ribosomal protein S4 - Silicibacter
pomeroyi
Length = 206
Score = 36.3 bits (80), Expect = 0.58
Identities = 18/52 (34%), Positives = 28/52 (53%)
Frame = +1
Query: 286 GLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVR 441
G + LERRL V++A ++ AR + H+ V + VNIPS+ V+
Sbjct: 85 GENLIGLLERRLDAVVYRAKFVPTVFAARQFVNHGHVLVNGKRVNIPSYRVK 136
>UniRef50_Q06SJ3 Cluster: Chloroplast 30S ribosomal protein S4; n=1;
Stigeoclonium helveticum|Rep: Chloroplast 30S ribosomal
protein S4 - Stigeoclonium helveticum (Green alga)
Length = 2922
Score = 36.3 bits (80), Expect = 0.58
Identities = 19/42 (45%), Positives = 25/42 (59%)
Frame = +1
Query: 307 LERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSF 432
LE RL VF+ +A +I AR LI HI + K+ V IPS+
Sbjct: 109 LEMRLDNIVFRLHMAPTIKAARQLISHGHILINKKKVTIPSY 150
>UniRef50_P36128 Cluster: Putative uncharacterized protein YKR033C;
n=1; Saccharomyces cerevisiae|Rep: Putative
uncharacterized protein YKR033C - Saccharomyces
cerevisiae (Baker's yeast)
Length = 141
Score = 35.9 bits (79), Expect = 0.77
Identities = 16/35 (45%), Positives = 20/35 (57%)
Frame = -2
Query: 421 CSQLACGHEYAFAGSKFWHDGWTSPGQL*TPASAD 317
CS L H +FWH GW+SP Q TPA+A+
Sbjct: 90 CSSLL--HRGVLTVKQFWHVGWSSPSQSSTPAAAE 122
>UniRef50_Q2JFE9 Cluster: 30S ribosomal protein S4; n=25;
Bacteria|Rep: 30S ribosomal protein S4 - Frankia sp.
(strain CcI3)
Length = 209
Score = 35.9 bits (79), Expect = 0.77
Identities = 18/49 (36%), Positives = 28/49 (57%)
Frame = +1
Query: 286 GLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSF 432
G ++ LE RL V++ G A S AR +R H++V + V+IPS+
Sbjct: 89 GDELLKILESRLDNVVYRGGFAPSRDAARQAVRHGHVQVNGRKVDIPSY 137
>UniRef50_Q6MIP0 Cluster: 30S ribosomal protein S4 B; n=1;
Bdellovibrio bacteriovorus|Rep: 30S ribosomal protein S4
B - Bdellovibrio bacteriovorus
Length = 208
Score = 35.5 bits (78), Expect = 1.0
Identities = 19/48 (39%), Positives = 28/48 (58%)
Frame = +1
Query: 301 DFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRL 444
+ LE+RL VF+ G A SI AR L+ + V + VNI S I+++
Sbjct: 91 NLLEKRLDNVVFRLGFASSIPAARQLVSHGKVLVNGKKVNIGSQIIKV 138
>UniRef50_O22029 Cluster: Chloroplast 30S ribosomal protein S4; n=3;
Cyanidiaceae|Rep: Chloroplast 30S ribosomal protein S4 -
Cyanidium caldarium
Length = 192
Score = 35.5 bits (78), Expect = 1.0
Identities = 18/49 (36%), Positives = 28/49 (57%)
Frame = +1
Query: 286 GLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSF 432
GL + LE RL V++AG A ++ AR L+ H++V + V I S+
Sbjct: 82 GLALLTMLETRLDHLVYRAGFAPTLPAARQLVNHGHVKVNGKKVTIASW 130
>UniRef50_Q9NV31 Cluster: U3 small nucleolar ribonucleoprotein
protein IMP3; n=13; Euteleostomi|Rep: U3 small nucleolar
ribonucleoprotein protein IMP3 - Homo sapiens (Human)
Length = 184
Score = 35.5 bits (78), Expect = 1.0
Identities = 17/45 (37%), Positives = 25/45 (55%)
Frame = +1
Query: 304 FLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIV 438
F RRL T + K +A+ + A + Q H+RV VV P+F+V
Sbjct: 106 FCRRRLPTVLLKLRMAQHLQAAVAFVEQGHVRVGPDVVTDPAFLV 150
>UniRef50_Q9Z5U7 Cluster: 30S ribosomal protein S4; n=5;
Alphaproteobacteria|Rep: 30S ribosomal protein S4 -
Zymomonas mobilis
Length = 204
Score = 35.1 bits (77), Expect = 1.3
Identities = 30/90 (33%), Positives = 40/90 (44%), Gaps = 8/90 (8%)
Frame = +1
Query: 235 GSYWSTGEKQMKLDYVLGLKIED--------FLERRLQTQVFKAGLAKSIHHARILIRQR 390
G Y EKQ + Y K++ LERRL V++A A +I AR L+
Sbjct: 60 GYYGDVTEKQFRRSYDDASKLKGDTSQNLIGILERRLDMIVYRAKFAPTIFAARQLVSHG 119
Query: 391 HIRVRKQVVNIPSFIVRLDSGKHIDFSLKS 480
HIRV NI S R++ G I K+
Sbjct: 120 HIRVNGVKCNIAS--RRVNPGDEISLGSKA 147
>UniRef50_A6YGA2 Cluster: Ribosomal protein S4; n=30; cellular
organisms|Rep: Ribosomal protein S4 - Leptosira
terrestris (Pleurastrum terrestre)
Length = 221
Score = 34.7 bits (76), Expect = 1.8
Identities = 19/49 (38%), Positives = 27/49 (55%)
Frame = +1
Query: 286 GLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSF 432
G + LE RL VF+ G+A +I AR L+ HI V + V+I S+
Sbjct: 94 GETLLQLLEMRLDNIVFRLGMAPTIPAARQLVNHGHIVVNNKKVDISSY 142
>UniRef50_Q8IKM0 Cluster: Ribosomal protein S4, putative; n=1;
Plasmodium falciparum 3D7|Rep: Ribosomal protein S4,
putative - Plasmodium falciparum (isolate 3D7)
Length = 159
Score = 34.7 bits (76), Expect = 1.8
Identities = 17/61 (27%), Positives = 31/61 (50%)
Frame = +1
Query: 289 LKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDSGKHIDF 468
+ + F RRL +F+ ++I A I+ +IR+ V+N PSF + + HI +
Sbjct: 75 ITVSSFCRRRLAVLLFRLKFVQTIKLAITYIQHGNIRIGNNVINNPSFHINRNMEDHIKW 134
Query: 469 S 471
+
Sbjct: 135 A 135
>UniRef50_Q17AL1 Cluster: U3 small nucleolar ribonucleoprotein
protein IMP3 (U3 snoRNP protein IMP3), putative; n=3;
Coelomata|Rep: U3 small nucleolar ribonucleoprotein
protein IMP3 (U3 snoRNP protein IMP3), putative - Aedes
aegypti (Yellowfever mosquito)
Length = 181
Score = 34.7 bits (76), Expect = 1.8
Identities = 15/50 (30%), Positives = 27/50 (54%)
Frame = +1
Query: 289 LKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIV 438
+ F RRL + + +++++ HA +I H+RV VV P+F+V
Sbjct: 100 ISASSFCRRRLPVVLLRNKMSENLKHATQMIEHGHVRVGTDVVKDPAFLV 149
>UniRef50_Q8SRU8 Cluster: U3 SMALL NUCLEOLAR RIBONUCLEOPROTEIN; n=1;
Encephalitozoon cuniculi|Rep: U3 SMALL NUCLEOLAR
RIBONUCLEOPROTEIN - Encephalitozoon cuniculi
Length = 180
Score = 34.7 bits (76), Expect = 1.8
Identities = 15/39 (38%), Positives = 23/39 (58%)
Frame = +2
Query: 86 IGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDPKR 202
I +YGLR++ E + + ++RK A L L+E DP R
Sbjct: 32 IAKYGLRDREEYTKYSRIVGKVRKLAEALARLKESDPVR 70
>UniRef50_O01513 Cluster: Putative 40S ribosomal protein S4-like;
n=4; Bilateria|Rep: Putative 40S ribosomal protein
S4-like - Caenorhabditis elegans
Length = 183
Score = 34.7 bits (76), Expect = 1.8
Identities = 18/59 (30%), Positives = 31/59 (52%)
Frame = +1
Query: 304 FLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDSGKHIDFSLKS 480
F RRL + G+ +S+ A L+ Q H+R+ ++V P+F+V S I ++ S
Sbjct: 105 FARRRLPVVMRNIGMCESVKTASDLVEQGHVRIGTKLVTDPAFMVTRSSEDMITWTKAS 163
>UniRef50_A7RWV6 Cluster: Predicted protein; n=1; Nematostella
vectensis|Rep: Predicted protein - Nematostella
vectensis
Length = 739
Score = 34.3 bits (75), Expect = 2.3
Identities = 14/32 (43%), Positives = 18/32 (56%)
Frame = +3
Query: 348 GEVHPSCQNFDPAKAYSCPQASCEHPIIYCAP 443
G VHPSC + D + CP +CE P + C P
Sbjct: 136 GNVHPSCSDADGTSSSCCPPLTCE-PDMMCNP 166
>UniRef50_P46743 Cluster: Mitochondrial ribosomal protein S4; n=1;
Prototheca wickerhamii|Rep: Mitochondrial ribosomal
protein S4 - Prototheca wickerhamii
Length = 511
Score = 34.3 bits (75), Expect = 2.3
Identities = 20/54 (37%), Positives = 30/54 (55%)
Frame = +1
Query: 307 LERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDSGKHIDF 468
+E+RL ++++G K+I AR R I V +V IPS I L+SG I +
Sbjct: 200 IEKRLDVVLYRSGFTKTIVAARQACRHSQIYVNSKVCRIPSTI--LESGDIISY 251
>UniRef50_UPI0000084740 Cluster: lethal (2) 35Bb CG31834-PA; n=1;
Drosophila melanogaster|Rep: lethal (2) 35Bb CG31834-PA
- Drosophila melanogaster
Length = 291
Score = 33.9 bits (74), Expect = 3.1
Identities = 22/54 (40%), Positives = 30/54 (55%)
Frame = +1
Query: 295 IEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDSGK 456
I DF RL TQ F+ KSIH++ +++ +KQ+ NIP FI R GK
Sbjct: 149 IADFGTARL-TQ-FRRTSTKSIHNSTASCQRQKEEKKKQIQNIPRFIPRKKKGK 200
>UniRef50_UPI0000498936 Cluster: U3 small nucleolar
ribonucleoprotein subunit; n=2; Entamoeba histolytica
HM-1:IMSS|Rep: U3 small nucleolar ribonucleoprotein
subunit - Entamoeba histolytica HM-1:IMSS
Length = 186
Score = 33.5 bits (73), Expect = 4.1
Identities = 17/46 (36%), Positives = 24/46 (52%)
Frame = +1
Query: 301 DFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIV 438
DF RRL V + + A LI+Q HI+V V+ P++IV
Sbjct: 105 DFCRRRLAIVVKAKKMVTDVTQAETLIQQGHIKVGPDVIRNPAYIV 150
>UniRef50_Q4P328 Cluster: Helicase SWR1; n=1; Ustilago maydis|Rep:
Helicase SWR1 - Ustilago maydis (Smut fungus)
Length = 1830
Score = 33.5 bits (73), Expect = 4.1
Identities = 16/51 (31%), Positives = 28/51 (54%)
Frame = +2
Query: 53 EKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDPKRL 205
EK ++ L+ + ++ LR + WR+ + R RKAA E E+ D ++L
Sbjct: 615 EKKAEERRLRALAKWTLREVLKQWRLAVNVVRARKAAAEKAEKEKSDKEQL 665
>UniRef50_Q5KLM6 Cluster: Nam9 protein, mitochondrial, putative;
n=2; Filobasidiella neoformans|Rep: Nam9 protein,
mitochondrial, putative - Cryptococcus neoformans
(Filobasidiella neoformans)
Length = 317
Score = 33.1 bits (72), Expect = 5.4
Identities = 13/44 (29%), Positives = 28/44 (63%)
Frame = +1
Query: 307 LERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIV 438
+ERRL +F++ A+++ AR + Q H+++ QV+ P+ ++
Sbjct: 140 IERRLDVLIFRSCFAQNVWEARRYVVQGHVKLNGQVMRNPNIML 183
>UniRef50_UPI0000E48FC4 Cluster: PREDICTED: similar to
ENSANGP00000010933; n=1; Strongylocentrotus
purpuratus|Rep: PREDICTED: similar to ENSANGP00000010933
- Strongylocentrotus purpuratus
Length = 462
Score = 32.3 bits (70), Expect = 9.4
Identities = 25/99 (25%), Positives = 43/99 (43%), Gaps = 1/99 (1%)
Frame = -1
Query: 572 INLPLHHWRSATLSLAEVLPLARPGRPPPNGDFREKSMCL-PESRRTINDGMFTTCLRTR 396
+ L + H+R+AT L + LA G+ P N + E ++ E +T N T + +
Sbjct: 128 VELTVRHFRAATPYLKQAAKLADRGKSPENNNTTENNLTNGGEGWQTRNASSTTATVHNQ 187
Query: 395 ICLCRIKILA*WMDFARPALNTCVCRRRSKKSSIFRPST 279
+ K+ W+D +L R + S RP+T
Sbjct: 188 SPQPQPKMQMRWVDMLSISLLMARVTRYANGSDKIRPNT 226
>UniRef50_A2XYL0 Cluster: Putative uncharacterized protein; n=2;
Oryza sativa|Rep: Putative uncharacterized protein -
Oryza sativa subsp. indica (Rice)
Length = 157
Score = 32.3 bits (70), Expect = 9.4
Identities = 16/42 (38%), Positives = 24/42 (57%)
Frame = +1
Query: 313 RRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIV 438
RRL T + K A+ + A I+Q H+RV + V P+F+V
Sbjct: 82 RRLATVMVKLKFAEHLKEAVTYIQQGHVRVGPETVTDPAFLV 123
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 581,595,234
Number of Sequences: 1657284
Number of extensions: 11912108
Number of successful extensions: 33115
Number of sequences better than 10.0: 82
Number of HSP's better than 10.0 without gapping: 32006
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 33107
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 44392209541
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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