Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30092
         (614 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC29A3.12 |rps902|rps9-2, rps9b|40S ribosomal protein S9|Schiz...   133   2e-32
SPAC24H6.07 |rps901|rps9-1, rps9a|40S ribosomal protein S9|Schiz...   132   3e-32
SPAC19D5.05c |||U3 snoRNP-associated protein Imp3 |Schizosacchar...    30   0.31 
SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large subunit|...    29   0.53 
SPAC4F10.12 |fta1|sma1|Sim4 and Mal2 associated |Schizosaccharom...    27   2.8  
SPBC29A3.09c |||AAA family ATPase Gcn20 |Schizosaccharomyces pom...    26   3.8  
SPBC4.01 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||Ma...    25   6.6  

>SPBC29A3.12 |rps902|rps9-2, rps9b|40S ribosomal protein
           S9|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 192

 Score =  133 bits (321), Expect = 2e-32
 Identities = 61/77 (79%), Positives = 70/77 (90%)
 Frame = +1

Query: 256 EKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFI 435
           E +MKLDYVL L+IEDFLERRLQTQVFK GLAKSIHHAR+LI QRHIRV KQ+VN+PSF+
Sbjct: 88  ESRMKLDYVLALRIEDFLERRLQTQVFKLGLAKSIHHARVLIFQRHIRVGKQIVNVPSFV 147

Query: 436 VRLDSGKHIDFSLKSPF 486
           VRLD+ KHIDF+L SP+
Sbjct: 148 VRLDAQKHIDFALSSPY 164



 Score =  117 bits (282), Expect = 1e-27
 Identities = 54/71 (76%), Positives = 60/71 (84%)
 Frame = +2

Query: 8   PSVFSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEE 187
           P   SKTY  PRRPFE ARLD ELK+ GEYGLRNK E+WRV  TL++IR+AARELLTL+E
Sbjct: 5   PRKQSKTYKVPRRPFESARLDAELKLAGEYGLRNKHEIWRVALTLSKIRRAARELLTLDE 64

Query: 188 KDPKRLFEGNA 220
           KDPKRLFEGNA
Sbjct: 65  KDPKRLFEGNA 75


>SPAC24H6.07 |rps901|rps9-1, rps9a|40S ribosomal protein
           S9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 191

 Score =  132 bits (320), Expect = 3e-32
 Identities = 61/77 (79%), Positives = 70/77 (90%)
 Frame = +1

Query: 256 EKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFI 435
           E +MKLDYVL L+IEDFLERRLQTQVFK GLAKSIHHAR+LI QRHIRV KQ+VN+PSF+
Sbjct: 88  ETRMKLDYVLALRIEDFLERRLQTQVFKLGLAKSIHHARVLIFQRHIRVGKQIVNVPSFV 147

Query: 436 VRLDSGKHIDFSLKSPF 486
           VRLD+ KHIDF+L SP+
Sbjct: 148 VRLDTQKHIDFALSSPY 164



 Score =  117 bits (282), Expect = 1e-27
 Identities = 54/71 (76%), Positives = 60/71 (84%)
 Frame = +2

Query: 8   PSVFSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEE 187
           P   SKTY  PRRPFE ARLD ELK+ GEYGLRNK E+WRV  TL++IR+AARELLTL+E
Sbjct: 5   PRKQSKTYKVPRRPFESARLDAELKLAGEYGLRNKHEIWRVALTLSKIRRAARELLTLDE 64

Query: 188 KDPKRLFEGNA 220
           KDPKRLFEGNA
Sbjct: 65  KDPKRLFEGNA 75


>SPAC19D5.05c |||U3 snoRNP-associated protein Imp3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 183

 Score = 29.9 bits (64), Expect = 0.31
 Identities = 14/42 (33%), Positives = 24/42 (57%)
 Frame = +1

Query: 313 RRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIV 438
           RRL   + K  +++ +  A  LI Q H+RV   V+  P+++V
Sbjct: 109 RRLPVIMCKLRMSQVVSEATRLIEQGHVRVGPHVITDPAYLV 150


>SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large
            subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1752

 Score = 29.1 bits (62), Expect = 0.53
 Identities = 18/44 (40%), Positives = 20/44 (45%)
 Frame = +3

Query: 294  D*GLLGASSADAGVQSWPGEVHPSCQNFDPAKAYSCPQASCEHP 425
            D GLLGA+S   GVQS PG   P      P    + P  S   P
Sbjct: 1521 DYGLLGAASPYKGVQS-PGYTSPFSSAMSPGYGLTSPSYSPSSP 1563


>SPAC4F10.12 |fta1|sma1|Sim4 and Mal2 associated
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 280

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 12/44 (27%), Positives = 23/44 (52%)
 Frame = +1

Query: 265 MKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHI 396
           +++D  L + +E FL++   TQ+    +A  I    + I Q H+
Sbjct: 132 VRMDGALWMAVEQFLQQEFDTQILPCLIAPEILLEFLKIWQNHV 175


>SPBC29A3.09c |||AAA family ATPase Gcn20 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 736

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 16/41 (39%), Positives = 23/41 (56%)
 Frame = +1

Query: 196 QEIVRR*CPSTSSGSYWSTGEKQMKLDYVLGLKIEDFLERR 318
           +E +R    S  S +    GEK M+LD V G K+E  ++RR
Sbjct: 86  KETIRMDSQSEISSTMGLVGEK-MELDAVKGRKVESRVDRR 125


>SPBC4.01 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 248

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = -2

Query: 289 DQAHNRVSSVFHQYSNTNQTT*KGITFE 206
           DQA N  S V H+  N +QTT  G+ +E
Sbjct: 75  DQAINSTSRVCHELRNWDQTT-GGLAYE 101


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,341,525
Number of Sequences: 5004
Number of extensions: 46823
Number of successful extensions: 125
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 119
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 125
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 269634532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)