Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30092
(614 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_06_0319 + 22330477-22330504,22331817-22332198,22333015-22333192 125 3e-29
11_06_0317 + 22326599-22326695,22327058-22327439,22328334-22328511 125 3e-29
03_01_0382 + 2961665-2961672,2962504-2962557,2962935-2963004,296... 125 3e-29
03_03_0147 + 14838707-14838734,14839316-14839430,14839464-148396... 75 6e-14
07_03_1358 - 25984897-25984997,25985623-25985650 47 1e-05
07_03_1357 - 25982861-25983068,25983354-25983361 47 1e-05
02_05_1008 - 33461225-33462334 33 0.14
04_04_1470 - 33818394-33818625,33819636-33819743,33819895-33820028 32 0.31
06_01_0324 - 2357432-2357724,2358042-2358105,2358321-2358404,235... 29 2.9
10_06_0085 + 10511258-10512327,10512978-10513058,10513318-105133... 29 3.9
01_06_0939 - 33188620-33189252,33189570-33189680,33190460-331906... 28 5.1
06_02_0325 + 14428065-14428799,14428916-14428993,14429607-144298... 28 6.8
05_05_0092 - 22323049-22323224,22323840-22323887,22323962-223240... 28 6.8
02_01_0744 + 5548306-5549445 28 6.8
08_02_0531 + 18256597-18256836,18257637-18257735,18258038-182581... 27 8.9
03_06_0095 - 31612293-31612607,31612982-31613119,31613229-316133... 27 8.9
>11_06_0319 + 22330477-22330504,22331817-22332198,22333015-22333192
Length = 195
Score = 125 bits (301), Expect = 3e-29
Identities = 59/82 (71%), Positives = 69/82 (84%)
Frame = +1
Query: 241 YWSTGEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVN 420
Y + Q KLDYVL L +E+FL RRLQT VFKAG+AKSIHHAR+LIRQRHIRV +Q+VN
Sbjct: 85 YGLLADGQNKLDYVLALTVENFLARRLQTLVFKAGMAKSIHHARVLIRQRHIRVGRQIVN 144
Query: 421 IPSFIVRLDSGKHIDFSLKSPF 486
IPSF+VR++S KHIDFSL SPF
Sbjct: 145 IPSFMVRVESEKHIDFSLTSPF 166
Score = 104 bits (249), Expect = 6e-23
Identities = 45/68 (66%), Positives = 57/68 (83%)
Frame = +2
Query: 17 FSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDP 196
+ KT+ PRRP+EK RLD ELK++GEYGLR KRE+WRV+Y L+RIR AR LLTL+EK+P
Sbjct: 10 YGKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNNARHLLTLDEKNP 69
Query: 197 KRLFEGNA 220
+R+FEG A
Sbjct: 70 RRIFEGEA 77
>11_06_0317 + 22326599-22326695,22327058-22327439,22328334-22328511
Length = 218
Score = 125 bits (301), Expect = 3e-29
Identities = 59/82 (71%), Positives = 69/82 (84%)
Frame = +1
Query: 241 YWSTGEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVN 420
Y + Q KLDYVL L +E+FL RRLQT VFKAG+AKSIHHAR+LIRQRHIRV +Q+VN
Sbjct: 108 YGLLADGQNKLDYVLALTVENFLARRLQTLVFKAGMAKSIHHARVLIRQRHIRVGRQIVN 167
Query: 421 IPSFIVRLDSGKHIDFSLKSPF 486
IPSF+VR++S KHIDFSL SPF
Sbjct: 168 IPSFMVRVESEKHIDFSLTSPF 189
Score = 103 bits (246), Expect = 1e-22
Identities = 45/66 (68%), Positives = 56/66 (84%)
Frame = +2
Query: 23 KTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDPKR 202
KT+ PRRP+EK RLD ELK++GEYGLR KRE+WRV+Y L+RIR AR LLTL+EK+P+R
Sbjct: 35 KTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNNARHLLTLDEKNPRR 94
Query: 203 LFEGNA 220
+FEG A
Sbjct: 95 IFEGEA 100
>03_01_0382 +
2961665-2961672,2962504-2962557,2962935-2963004,
2963141-2963386,2967246-2967491,2968837-2968888,
2969270-2969651,2970527-2970681,2971389-2971713,
2975803-2975871,2976189-2976346,2976444-2976551,
2976659-2977131
Length = 781
Score = 125 bits (301), Expect = 3e-29
Identities = 59/82 (71%), Positives = 69/82 (84%)
Frame = +1
Query: 241 YWSTGEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVN 420
Y + Q KLDYVL L +E+FL RRLQT VFKAG+AKSIHHAR+LIRQRHIRV +Q+VN
Sbjct: 301 YGLLADGQNKLDYVLALTVENFLARRLQTLVFKAGMAKSIHHARVLIRQRHIRVGRQIVN 360
Query: 421 IPSFIVRLDSGKHIDFSLKSPF 486
IPSF+VR++S KHIDFSL SPF
Sbjct: 361 IPSFMVRVESEKHIDFSLTSPF 382
Score = 104 bits (249), Expect = 6e-23
Identities = 45/68 (66%), Positives = 57/68 (83%)
Frame = +2
Query: 17 FSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDP 196
+ KT+ PRRP+EK RLD ELK++GEYGLR KRE+WRV+Y L+RIR AR LLTL+EK+P
Sbjct: 226 YGKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNNARHLLTLDEKNP 285
Query: 197 KRLFEGNA 220
+R+FEG A
Sbjct: 286 RRIFEGEA 293
>03_03_0147 +
14838707-14838734,14839316-14839430,14839464-14839697,
14840571-14840667
Length = 157
Score = 74.5 bits (175), Expect = 6e-14
Identities = 37/68 (54%), Positives = 48/68 (70%)
Frame = +2
Query: 17 FSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDP 196
+ KT+ PRRP+EK R D ELK+ GEYGLR+K E+WRV +ELLTL+EK+P
Sbjct: 10 YGKTFKKPRRPYEKERPDAELKLYGEYGLRSKCELWRV-----------QELLTLDEKNP 58
Query: 197 KRLFEGNA 220
+R+FEG A
Sbjct: 59 RRIFEGEA 66
Score = 68.1 bits (159), Expect = 5e-12
Identities = 33/52 (63%), Positives = 37/52 (71%)
Frame = +1
Query: 241 YWSTGEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHI 396
Y GE Q KLDYVL L +E+FL+ RLQT VFK G KSIHH +LIRQ HI
Sbjct: 74 YGLLGEGQNKLDYVLALTVENFLQCRLQTIVFKNGTVKSIHHDHVLIRQHHI 125
>07_03_1358 - 25984897-25984997,25985623-25985650
Length = 42
Score = 46.8 bits (106), Expect = 1e-05
Identities = 18/28 (64%), Positives = 23/28 (82%)
Frame = +2
Query: 17 FSKTYVTPRRPFEKARLDQELKIIGEYG 100
+ KT+ PRRP+EK RLD ELK++GEYG
Sbjct: 10 YGKTFKKPRRPYEKERLDAELKLVGEYG 37
>07_03_1357 - 25982861-25983068,25983354-25983361
Length = 71
Score = 46.8 bits (106), Expect = 1e-05
Identities = 22/29 (75%), Positives = 25/29 (86%)
Frame = +1
Query: 397 RVRKQVVNIPSFIVRLDSGKHIDFSLKSP 483
RV +Q+VNIPSFIVRL+S KHI FSL SP
Sbjct: 3 RVGRQLVNIPSFIVRLESEKHIAFSLTSP 31
>02_05_1008 - 33461225-33462334
Length = 369
Score = 33.5 bits (73), Expect = 0.14
Identities = 23/76 (30%), Positives = 42/76 (55%)
Frame = +1
Query: 235 GSYWSTGEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQV 414
G Y GE Q+ L+Y+ G +E RR+ ++ F A +A+ + + +RHI V + +
Sbjct: 156 GMYEQAGELQILLEYMDGGSLEG---RRIASEAFLADVARQVLSGIAYLHRRHI-VHRDI 211
Query: 415 VNIPSFIVRLDSGKHI 462
PS ++ +DSG+ +
Sbjct: 212 K--PSNLL-IDSGRRV 224
>04_04_1470 - 33818394-33818625,33819636-33819743,33819895-33820028
Length = 157
Score = 32.3 bits (70), Expect = 0.31
Identities = 16/42 (38%), Positives = 24/42 (57%)
Frame = +1
Query: 313 RRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIV 438
RRL T + K A+ + A I+Q H+RV + V P+F+V
Sbjct: 82 RRLATVMVKLKFAEHLKEAVTYIQQGHVRVGPETVTDPAFLV 123
>06_01_0324 -
2357432-2357724,2358042-2358105,2358321-2358404,
2358638-2358715,2359298-2359360,2359459-2359561,
2359675-2359800,2360212-2360258,2361284-2361388,
2361483-2361605,2361759-2361854,2362052-2362141,
2362759-2362815,2362899-2363028,2363613-2363708,
2363815-2363875,2364391-2364490
Length = 571
Score = 29.1 bits (62), Expect = 2.9
Identities = 16/43 (37%), Positives = 21/43 (48%)
Frame = +3
Query: 312 ASSADAGVQSWPGEVHPSCQNFDPAKAYSCPQASCEHPIIYCA 440
A+S G SW CQ++DPAK Y+ Q H I+ A
Sbjct: 394 AASLVKGNLSWRSREFLDCQSYDPAKVYNFIQTGV-HGRIFAA 435
>10_06_0085 +
10511258-10512327,10512978-10513058,10513318-10513396,
10514160-10514201
Length = 423
Score = 28.7 bits (61), Expect = 3.9
Identities = 13/26 (50%), Positives = 16/26 (61%)
Frame = +1
Query: 295 IEDFLERRLQTQVFKAGLAKSIHHAR 372
+ED+ E L T F A L KS+H AR
Sbjct: 110 VEDYFEGSLHTLDFLAALDKSLHRAR 135
>01_06_0939 -
33188620-33189252,33189570-33189680,33190460-33190668,
33190781-33191078
Length = 416
Score = 28.3 bits (60), Expect = 5.1
Identities = 14/41 (34%), Positives = 23/41 (56%)
Frame = +2
Query: 71 QELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKD 193
Q L+ I G+ + +E++ + +L RIR R LT+E D
Sbjct: 212 QRLQTIHLLGIDDNQEIFTTQTSLTRIRAVPRYSLTIESLD 252
>06_02_0325 +
14428065-14428799,14428916-14428993,14429607-14429844,
14431199-14431296,14431770-14432063,14432418-14432702
Length = 575
Score = 27.9 bits (59), Expect = 6.8
Identities = 13/37 (35%), Positives = 18/37 (48%)
Frame = -2
Query: 352 SPGQL*TPASADDAPRSPQSSDQAHNRVSSVFHQYSN 242
SP L +P++ D + +SP S N S HQ N
Sbjct: 24 SPMSLSSPSTVDASSKSPSSPSTEENGTSPAHHQADN 60
>05_05_0092 -
22323049-22323224,22323840-22323887,22323962-22324016,
22324260-22324360,22324457-22324518,22324683-22324881,
22325107-22325254,22325331-22325377,22325928-22325995,
22326428-22326542,22326657-22326816
Length = 392
Score = 27.9 bits (59), Expect = 6.8
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = -1
Query: 557 HHWRSATLSLAEVLPLARPGRP 492
H WR++ L+LAE L + P +P
Sbjct: 360 HAWRNSRLTLAEALEFSGPSKP 381
>02_01_0744 + 5548306-5549445
Length = 379
Score = 27.9 bits (59), Expect = 6.8
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = -1
Query: 560 LHHWRSATLSLAEVLPLARPGRPPPNGD 477
+H W A A+ + + +PG PPP GD
Sbjct: 323 VHDWIFAGGPAAQAVFVFKPGAPPPGGD 350
>08_02_0531 +
18256597-18256836,18257637-18257735,18258038-18258184,
18258295-18258427,18258521-18258585,18258792-18258962,
18259095-18259199,18259495-18259602,18259792-18260088,
18260191-18260256,18260477-18260679,18261178-18261232,
18261318-18261503,18261701-18261985
Length = 719
Score = 27.5 bits (58), Expect = 8.9
Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 4/49 (8%)
Frame = +2
Query: 50 FEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAAR----ELLTLE 184
FE A+ ++ KII E R+ ++ +KY LA A ELL L+
Sbjct: 394 FEMAKQEESKKIISEEHQRSNEQITDLKYKLANCMNALESKNLELLNLQ 442
>03_06_0095 -
31612293-31612607,31612982-31613119,31613229-31613315,
31613410-31613469,31613563-31613662,31613757-31614163,
31614335-31614805,31614910-31615032,31615396-31615479,
31615609-31615678,31615767-31615846
Length = 644
Score = 27.5 bits (58), Expect = 8.9
Identities = 16/46 (34%), Positives = 21/46 (45%)
Frame = -1
Query: 515 PLARPGRPPPNGDFREKSMCLPESRRTINDGMFTTCLRTRICLCRI 378
P + R D +S P SRRT+ND + T C T C R+
Sbjct: 187 PSVKASRKNNRADAMLRSSYPPPSRRTLNDPVMTDC-STSGCSSRL 231
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,192,979
Number of Sequences: 37544
Number of extensions: 348073
Number of successful extensions: 979
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 950
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 977
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1478421500
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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