Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30092
         (614 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z69302-5|CAA93262.1|  189|Caenorhabditis elegans Hypothetical pr...   139   1e-33
U97189-6|AAC48162.1|  183|Caenorhabditis elegans Hypothetical pr...    35   0.053
Z78063-3|CAB01502.1|  236|Caenorhabditis elegans Hypothetical pr...    29   2.0  
AC006790-9|AAF60735.1|  382|Caenorhabditis elegans Hypothetical ...    29   2.6  
U58749-10|AAK18879.1|  465|Caenorhabditis elegans Temporarily as...    29   3.5  
U39652-5|AAV28338.1|  986|Caenorhabditis elegans Hypothetical pr...    27   8.1  
U39652-4|AAV28337.1| 1122|Caenorhabditis elegans Hypothetical pr...    27   8.1  

>Z69302-5|CAA93262.1|  189|Caenorhabditis elegans Hypothetical
           protein F40F8.10 protein.
          Length = 189

 Score =  139 bits (337), Expect = 1e-33
 Identities = 65/77 (84%), Positives = 73/77 (94%)
 Frame = +1

Query: 256 EKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFI 435
           E +MKLDYVLGLK+EDFLERRLQTQVFK GLAKSIHHARILI+Q HIRVR+QVV++PSFI
Sbjct: 88  ETKMKLDYVLGLKVEDFLERRLQTQVFKLGLAKSIHHARILIKQHHIRVRRQVVDVPSFI 147

Query: 436 VRLDSGKHIDFSLKSPF 486
           VRLDS KHIDFSL+SP+
Sbjct: 148 VRLDSQKHIDFSLQSPY 164



 Score =  124 bits (298), Expect = 7e-29
 Identities = 57/73 (78%), Positives = 66/73 (90%)
 Frame = +2

Query: 2   RVPSVFSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTL 181
           R+ +V SK   +PRRPFEK RLDQELK+IG +GL+NKREVWRVKYTLA++RKAARELLTL
Sbjct: 3   RLKTVQSKVTKSPRRPFEKERLDQELKLIGTFGLKNKREVWRVKYTLAKVRKAARELLTL 62

Query: 182 EEKDPKRLFEGNA 220
           E+KDPKRLFEGNA
Sbjct: 63  EDKDPKRLFEGNA 75


>U97189-6|AAC48162.1|  183|Caenorhabditis elegans Hypothetical
           protein C48B6.2 protein.
          Length = 183

 Score = 34.7 bits (76), Expect = 0.053
 Identities = 18/59 (30%), Positives = 31/59 (52%)
 Frame = +1

Query: 304 FLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDSGKHIDFSLKS 480
           F  RRL   +   G+ +S+  A  L+ Q H+R+  ++V  P+F+V   S   I ++  S
Sbjct: 105 FARRRLPVVMRNIGMCESVKTASDLVEQGHVRIGTKLVTDPAFMVTRSSEDMITWTKAS 163


>Z78063-3|CAB01502.1|  236|Caenorhabditis elegans Hypothetical
           protein F45D3.3 protein.
          Length = 236

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 23/60 (38%), Positives = 27/60 (45%), Gaps = 3/60 (5%)
 Frame = +3

Query: 258 KTDETRLCAWSE---D*GLLGASSADAGVQSWPGEVHPSCQNFDPAKAYSCPQASCEHPI 428
           KTDE    A S+   D    G +SA A V + P   + S  NFD  K  SC    C  PI
Sbjct: 107 KTDEIVESAESDSSSDTDYFGEASASAPVSN-PALTYLSGANFDNVKQPSCQMLGCTGPI 165


>AC006790-9|AAF60735.1|  382|Caenorhabditis elegans Hypothetical
           protein Y49F6B.9 protein.
          Length = 382

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = -2

Query: 421 CSQLACGHEYAFAGSKFWHDG 359
           C +  CG E+ F   K WH+G
Sbjct: 152 CQRPGCGREFCFKCRKVWHEG 172


>U58749-10|AAK18879.1|  465|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 224 protein.
          Length = 465

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = -2

Query: 424 GCSQLACGHEYAFAGSKFWH 365
           GC +L   +EY FA  K WH
Sbjct: 339 GCDELIFANEYTFAEEKSWH 358


>U39652-5|AAV28338.1|  986|Caenorhabditis elegans Hypothetical
           protein R07E4.1b protein.
          Length = 986

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 10/42 (23%), Positives = 28/42 (66%)
 Frame = +1

Query: 292 KIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVV 417
           ++EDFLE+ ++ ++ ++   ++I H+R LI+  +   ++ ++
Sbjct: 164 QMEDFLEKTVRPRMLQSVSVEAISHSRALIQFNYKEPQQSII 205


>U39652-4|AAV28337.1| 1122|Caenorhabditis elegans Hypothetical
           protein R07E4.1a protein.
          Length = 1122

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 10/42 (23%), Positives = 28/42 (66%)
 Frame = +1

Query: 292 KIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVV 417
           ++EDFLE+ ++ ++ ++   ++I H+R LI+  +   ++ ++
Sbjct: 300 QMEDFLEKTVRPRMLQSVSVEAISHSRALIQFNYKEPQQSII 341


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,243,405
Number of Sequences: 27780
Number of extensions: 284308
Number of successful extensions: 788
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 765
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 788
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1332243108
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)