Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30092
(614 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g15200.1 68418.m01781 40S ribosomal protein S9 (RPS9B) 40S ri... 128 3e-30
At5g39850.1 68418.m04829 40S ribosomal protein S9 (RPS9C) 40S ri... 126 2e-29
At5g15750.1 68418.m01842 RNA-binding S4 domain-containing protei... 32 0.26
At2g22180.1 68415.m02634 hydroxyproline-rich glycoprotein family... 29 2.4
At5g01850.1 68418.m00104 protein kinase, putative similar to pro... 29 3.2
At1g24490.1 68414.m03084 60 kDa inner membrane family protein si... 29 3.2
At5g67320.1 68418.m08490 WD-40 repeat family protein strong simi... 28 4.3
At5g06130.2 68418.m00682 chaperone protein dnaJ-related similar ... 28 4.3
At1g43730.1 68414.m05028 hypothetical protein 28 4.3
At5g41310.1 68418.m05020 kinesin motor protein-related 27 7.5
At5g28615.1 68418.m03493 hypothetical protein 27 7.5
At4g15880.1 68417.m02413 Ulp1 protease family protein contains P... 27 9.9
At1g60720.1 68414.m06835 hypothetical protein 27 9.9
>At5g15200.1 68418.m01781 40S ribosomal protein S9 (RPS9B) 40S
ribosomal protein S9, Chlamydomonas sp., EMBL:AU066528
Length = 198
Score = 128 bits (309), Expect = 3e-30
Identities = 61/82 (74%), Positives = 70/82 (85%)
Frame = +1
Query: 241 YWSTGEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVN 420
Y E Q KLDYVL L +E+FLERRLQT VFK+G+AKSIHH+R+LIRQRHIRV KQ+VN
Sbjct: 85 YGLLDESQNKLDYVLALTVENFLERRLQTIVFKSGMAKSIHHSRVLIRQRHIRVGKQLVN 144
Query: 421 IPSFIVRLDSGKHIDFSLKSPF 486
IPSF+VRLDS KHIDF+L SPF
Sbjct: 145 IPSFMVRLDSQKHIDFALTSPF 166
Score = 111 bits (266), Expect = 5e-25
Identities = 47/68 (69%), Positives = 60/68 (88%)
Frame = +2
Query: 17 FSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDP 196
+ KT+ PRRP+EK RLD ELK++GEYGLRNKRE+WRV+Y+L+RIR AAR+LLTL+EK P
Sbjct: 10 YGKTFKGPRRPYEKERLDSELKLVGEYGLRNKRELWRVQYSLSRIRNAARDLLTLDEKSP 69
Query: 197 KRLFEGNA 220
+R+FEG A
Sbjct: 70 RRIFEGEA 77
>At5g39850.1 68418.m04829 40S ribosomal protein S9 (RPS9C) 40S
ribosomal protein S9 - Chlamydomonas sp.,EMBL:AU066528
Length = 197
Score = 126 bits (303), Expect = 2e-29
Identities = 59/82 (71%), Positives = 70/82 (85%)
Frame = +1
Query: 241 YWSTGEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVN 420
Y E Q KLDYVL L +E+FLERRLQT VFK+G+AKSIHHAR+LIRQRHIRV +Q+VN
Sbjct: 85 YGLLDETQNKLDYVLALTVENFLERRLQTIVFKSGMAKSIHHARVLIRQRHIRVGRQLVN 144
Query: 421 IPSFIVRLDSGKHIDFSLKSPF 486
IPSF+VR++S KH+DFSL SPF
Sbjct: 145 IPSFMVRVESQKHVDFSLTSPF 166
Score = 110 bits (265), Expect = 6e-25
Identities = 48/68 (70%), Positives = 60/68 (88%)
Frame = +2
Query: 17 FSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDP 196
+ KT+ PRRP+EK RLD ELK++GEYGLR KRE+WRV+YTL+RIR AARELLTL+EK+P
Sbjct: 10 YGKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYTLSRIRNAARELLTLDEKNP 69
Query: 197 KRLFEGNA 220
+R+FEG A
Sbjct: 70 RRIFEGEA 77
>At5g15750.1 68418.m01842 RNA-binding S4 domain-containing protein
40S RIBOSOMAL PROTEINs - different species
Length = 182
Score = 32.3 bits (70), Expect = 0.26
Identities = 16/50 (32%), Positives = 24/50 (48%)
Frame = +1
Query: 289 LKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIV 438
L + F RRL T + A+ A I Q H+RV + + P+F+V
Sbjct: 99 LSVSSFCRRRLSTVLVHLKFAEHHKEAVTYIEQGHVRVGPETITDPAFLV 148
>At2g22180.1 68415.m02634 hydroxyproline-rich glycoprotein family
protein
Length = 291
Score = 29.1 bits (62), Expect = 2.4
Identities = 10/25 (40%), Positives = 17/25 (68%)
Frame = -1
Query: 557 HHWRSATLSLAEVLPLARPGRPPPN 483
HHWR+ +L+L+ + + P PPP+
Sbjct: 48 HHWRNHSLNLSPLPTTSSPPLPPPD 72
>At5g01850.1 68418.m00104 protein kinase, putative similar to
protein kinase [Arabidopsis thaliana]
gi|1054633|emb|CAA63387; contains protein kinase domain,
Pfam:PF00069
Length = 333
Score = 28.7 bits (61), Expect = 3.2
Identities = 12/18 (66%), Positives = 15/18 (83%)
Frame = -3
Query: 486 EWRFQREVNVLARVQAHN 433
E RF REVN+++RVQ HN
Sbjct: 60 ESRFVREVNMMSRVQHHN 77
>At1g24490.1 68414.m03084 60 kDa inner membrane family protein
similar to chloroplast membrane protein (ALBINO3)
(GI:3927828) [Arabidopsis thaliana]
Length = 1013
Score = 28.7 bits (61), Expect = 3.2
Identities = 16/41 (39%), Positives = 20/41 (48%), Gaps = 2/41 (4%)
Frame = +2
Query: 23 KTYVTPRR-PFEKARLDQ-ELKIIGEYGLRNKREVWRVKYT 139
K ++ PRR P + Q E K EYG RN E W + T
Sbjct: 479 KYFIKPRRHPESECSATQTEYKFTSEYGKRNSSECWAMTTT 519
>At5g67320.1 68418.m08490 WD-40 repeat family protein strong
similarity to unknown protein (ref|NP_005638.1)
Length = 613
Score = 28.3 bits (60), Expect = 4.3
Identities = 12/28 (42%), Positives = 14/28 (50%)
Frame = +3
Query: 261 TDETRLCAWSED*GLLGASSADAGVQSW 344
T E CAWS LL + S DA + W
Sbjct: 265 TSEVCACAWSPSASLLASGSGDATARIW 292
>At5g06130.2 68418.m00682 chaperone protein dnaJ-related similar to
unknown protein (pir||T00468); contains Pfam PF00684 :
DnaJ central domain (4 repeats)
Length = 315
Score = 28.3 bits (60), Expect = 4.3
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = -1
Query: 497 RPPPNGDFREKSMCLPESRRTIND 426
RPPP+GD + C+ E T+ D
Sbjct: 58 RPPPSGDTVPNNFCIIEGSETVQD 81
>At1g43730.1 68414.m05028 hypothetical protein
Length = 320
Score = 28.3 bits (60), Expect = 4.3
Identities = 9/14 (64%), Positives = 10/14 (71%)
Frame = -2
Query: 379 SKFWHDGWTSPGQL 338
+KFWHD WT G L
Sbjct: 77 AKFWHDNWTGHGPL 90
>At5g41310.1 68418.m05020 kinesin motor protein-related
Length = 961
Score = 27.5 bits (58), Expect = 7.5
Identities = 15/36 (41%), Positives = 19/36 (52%)
Frame = +2
Query: 323 RRRCSKLAWRSPSIMPEF*SGKGIFVSASKL*TSHH 430
RRR S A S + F G F+ AS++ TSHH
Sbjct: 141 RRRWSLPADHSKGVDSNFNDGGSQFIEASEINTSHH 176
>At5g28615.1 68418.m03493 hypothetical protein
Length = 149
Score = 27.5 bits (58), Expect = 7.5
Identities = 9/14 (64%), Positives = 10/14 (71%)
Frame = -2
Query: 379 SKFWHDGWTSPGQL 338
+KFWHD WT G L
Sbjct: 9 AKFWHDDWTGLGPL 22
>At4g15880.1 68417.m02413 Ulp1 protease family protein contains Pfam
profile PF02902: Ulp1 protease family, C-terminal
catalytic domain; low similarity to
sentrin/SUMO-specific protease [Homo sapiens]
GI:6906859; identical to cDNA hypothetical protein,
partial (1189 bp) GI:2326349
Length = 489
Score = 27.1 bits (57), Expect = 9.9
Identities = 12/38 (31%), Positives = 18/38 (47%)
Frame = +2
Query: 8 PSVFSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREV 121
P K PR PF D+E ++ + RN+R+V
Sbjct: 242 PKTVEKRVEVPREPFIPLTEDEEAEVYRAFSGRNRRKV 279
>At1g60720.1 68414.m06835 hypothetical protein
Length = 289
Score = 27.1 bits (57), Expect = 9.9
Identities = 9/12 (75%), Positives = 9/12 (75%)
Frame = -2
Query: 373 FWHDGWTSPGQL 338
FWHD WTS G L
Sbjct: 25 FWHDSWTSLGPL 36
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,570,213
Number of Sequences: 28952
Number of extensions: 263182
Number of successful extensions: 729
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 713
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 729
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1236350304
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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