Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30091
         (549 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81124-6|CAB03375.1|  335|Caenorhabditis elegans Hypothetical pr...    30   0.95 
AF016422-5|AAG24171.1|  291|Caenorhabditis elegans Serpentine re...    27   6.7  

>Z81124-6|CAB03375.1|  335|Caenorhabditis elegans Hypothetical
           protein T21B4.8 protein.
          Length = 335

 Score = 30.3 bits (65), Expect = 0.95
 Identities = 22/80 (27%), Positives = 38/80 (47%), Gaps = 1/80 (1%)
 Frame = +3

Query: 180 YEVFDILFLFRV*TFLVS*F*VCC-YYLN*SMVLRVFLSCKYEQYSSLSPVALATSATFL 356
           Y +F  +F+F +  F ++ F  CC YYL  S   ++  + +  Q  S   + + T    L
Sbjct: 204 YIIFSYVFMFSIAIFEMTFFSACCIYYLVFSTTTQISSTTRKFQLRSFWAITIQTLIPLL 263

Query: 357 LQTM**RSSATVTYDYQGIS 416
              +    +AT+T + QG S
Sbjct: 264 FVII--PITATMTKEKQGYS 281


>AF016422-5|AAG24171.1|  291|Caenorhabditis elegans Serpentine
           receptor, class bc (class b-like) protein 58 protein.
          Length = 291

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 14/57 (24%), Positives = 28/57 (49%)
 Frame = +1

Query: 58  CTFVCDLSQNEIYLTLRKRLEILFNESW*HVNIDIYRSILAMKYLIFYFCFEYEHFL 228
           C FV D+  +      R  + I ++E W   +  +Y  I  + +++F+  F + HF+
Sbjct: 147 CDFVLDVPAD--CAIFRCAINICYHEYWKTFSQTMYFCIGTLTFILFFRLFIWNHFI 201


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,335,296
Number of Sequences: 27780
Number of extensions: 190855
Number of successful extensions: 369
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 364
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 369
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1113119490
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)