Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30090
         (820 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC663.01c |ekc1|SPCC777.16c|protein phosphatase regulatory sub...    26   5.6  
SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase Shk1|Schizosacc...    26   7.4  
SPBC1773.08c |||mannosyltransferase complex subunit |Schizosacch...    26   7.4  
SPCC1223.09 |||uricase |Schizosaccharomyces pombe|chr 3|||Manual       26   7.4  
SPAC23D3.12 |||inorganic phosphate transporter |Schizosaccharomy...    25   9.8  

>SPCC663.01c |ekc1|SPCC777.16c|protein phosphatase regulatory
           subunit Ekc1 |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 838

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = +1

Query: 28  DMPESNTNGRLLWDFLQQLLNDPTQRYTNY 117
           D P +N    +++D +QQ+LN P  +  NY
Sbjct: 535 DYPWNNFLHNVVYDVVQQVLNAPMDKDQNY 564


>SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase
           Shk1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 658

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 25/103 (24%), Positives = 44/103 (42%), Gaps = 2/103 (1%)
 Frame = +3

Query: 306 RNPTELKNIKNISLLRQQMSPTRVVPQTLVKTEMKXXXXXXXXXXXXM--PTDLSMSASE 479
           R P+ L + K+   + +  SP  + PQTL  +E K                +    + + 
Sbjct: 284 RQPSPLVSSKSTDNIIRSHSPVLLTPQTLSTSETKHIRPNNSTPYQRRAETSTKPKAVAT 343

Query: 480 PWRKRARSDTRPHRRRQRNMTNIGSVRLSEIT***NAKSTTVL 608
           P +  A S  R  +R  R  +N  +V L+++    N K+ T+L
Sbjct: 344 PQKVEAPSAPRLQKRAPRQQSNDSAV-LAKLQSICNPKNPTLL 385


>SPBC1773.08c |||mannosyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 391

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
 Frame = -3

Query: 689 HTLVVSLVYLNKITVHIFHFLNLRH-NAQHCSRLRVSLSC 573
           H+L   L +L+K  VH F  L  RH +  HC +   SL C
Sbjct: 323 HSLAAGL-FLSKEQVHYFRDLGYRHSDIHHCGQ---SLGC 358


>SPCC1223.09 |||uricase |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 296

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = +3

Query: 270 KVQGERHCYQFLRNPTELK 326
           +VQG+ H + F+RNP E +
Sbjct: 114 EVQGKPHSHSFIRNPGETR 132


>SPAC23D3.12 |||inorganic phosphate transporter |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 559

 Score = 25.4 bits (53), Expect = 9.8
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = +2

Query: 305 KKPNRIEKYQKHISTATTNESHSRCTTNFG 394
           KK N+    +K I+  T+++SH   T +FG
Sbjct: 279 KKDNQNVVEEKQINLTTSSDSHPTSTEDFG 308


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,284,555
Number of Sequences: 5004
Number of extensions: 65710
Number of successful extensions: 179
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 165
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 179
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 400438000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)