Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30090
(820 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U39470-3|AAC71120.1| 377|Caenorhabditis elegans Hypothetical pr... 77 2e-14
U41547-4|AAA83194.3| 376|Caenorhabditis elegans Hypothetical pr... 73 2e-13
AF024491-4|AAZ82855.1| 365|Caenorhabditis elegans Hypothetical ... 72 6e-13
AF024491-3|AAB70311.2| 420|Caenorhabditis elegans Hypothetical ... 72 6e-13
Z79599-1|CAB01871.4| 493|Caenorhabditis elegans Hypothetical pr... 70 2e-12
Z79597-3|CAB01862.4| 493|Caenorhabditis elegans Hypothetical pr... 70 2e-12
U56966-1|AAA98717.1| 208|Caenorhabditis elegans Ets class trans... 69 5e-12
U97005-4|AAB52283.1| 314|Caenorhabditis elegans Hypothetical pr... 64 1e-10
U97005-6|AAB52279.1| 242|Caenorhabditis elegans Hypothetical pr... 60 1e-09
U38937-1|AAA93079.1| 441|Caenorhabditis elegans LIN-1 protein. 60 2e-09
U38935-1|AAB60254.1| 441|Caenorhabditis elegans LIN-1 protein. 60 2e-09
AF067606-1|AAC17530.3| 441|Caenorhabditis elegans Abnormal cell... 60 2e-09
AF036689-2|AAB88319.1| 180|Caenorhabditis elegans Hypothetical ... 52 7e-07
U64598-8|AAQ82848.1| 396|Caenorhabditis elegans Hypothetical pr... 36 0.046
U64598-9|AAK39212.2| 174|Caenorhabditis elegans Hypothetical pr... 31 0.75
AF025452-1|AAB70944.1| 411|Caenorhabditis elegans C-type lectin... 29 5.3
Z71180-1|CAA94891.1| 267|Caenorhabditis elegans Hypothetical pr... 28 7.0
Z99283-1|CAB16536.2| 414|Caenorhabditis elegans Hypothetical pr... 28 9.2
>U39470-3|AAC71120.1| 377|Caenorhabditis elegans Hypothetical
protein T08H4.3 protein.
Length = 377
Score = 76.6 bits (180), Expect = 2e-14
Identities = 39/86 (45%), Positives = 53/86 (61%)
Frame = +1
Query: 28 DMPESNTNGRLLWDFLQQLLNDPTQRYTNYIAWKNRDTGVFKIVDPAGLAKLWGIQKNHL 207
++ S + LW FL +LL+D +RY+ I W+ G FK+VDP +A+ WG +K+
Sbjct: 205 NLAHSGSGQTQLWQFLLELLSD--KRYSEVITWEGTQ-GEFKLVDPDEVARKWGERKSKP 261
Query: 208 SMNYDKMSRALRYYYRLIFCAKSRAK 285
+MNYDKMSRALRYYY AK K
Sbjct: 262 NMNYDKMSRALRYYYDKNIMAKVHGK 287
>U41547-4|AAA83194.3| 376|Caenorhabditis elegans Hypothetical
protein F22A3.1 protein.
Length = 376
Score = 73.3 bits (172), Expect = 2e-13
Identities = 32/65 (49%), Positives = 44/65 (67%)
Frame = +1
Query: 61 LWDFLQQLLNDPTQRYTNYIAWKNRDTGVFKIVDPAGLAKLWGIQKNHLSMNYDKMSRAL 240
LW F+++LL+ P Q Y+ + W +RD G FKI LA+ WG +KN MNYDK+SR+L
Sbjct: 290 LWQFIRELLDQPKQ-YSACVRWVDRDEGTFKIESSLLLARYWGQRKNRSQMNYDKLSRSL 348
Query: 241 RYYYR 255
R YY+
Sbjct: 349 RQYYK 353
>AF024491-4|AAZ82855.1| 365|Caenorhabditis elegans Hypothetical
protein C24A1.2b protein.
Length = 365
Score = 71.7 bits (168), Expect = 6e-13
Identities = 31/65 (47%), Positives = 44/65 (67%)
Frame = +1
Query: 61 LWDFLQQLLNDPTQRYTNYIAWKNRDTGVFKIVDPAGLAKLWGIQKNHLSMNYDKMSRAL 240
LW+FL +LL D Q +I W ++ G+FK+VD +++LWG+ KN MNY+ M RAL
Sbjct: 241 LWEFLLRLLQDD-QYSPKFIKWIDQAKGIFKLVDSKAVSRLWGMHKNKPGMNYETMGRAL 299
Query: 241 RYYYR 255
RYYY+
Sbjct: 300 RYYYQ 304
>AF024491-3|AAB70311.2| 420|Caenorhabditis elegans Hypothetical
protein C24A1.2a protein.
Length = 420
Score = 71.7 bits (168), Expect = 6e-13
Identities = 31/65 (47%), Positives = 44/65 (67%)
Frame = +1
Query: 61 LWDFLQQLLNDPTQRYTNYIAWKNRDTGVFKIVDPAGLAKLWGIQKNHLSMNYDKMSRAL 240
LW+FL +LL D Q +I W ++ G+FK+VD +++LWG+ KN MNY+ M RAL
Sbjct: 296 LWEFLLRLLQDD-QYSPKFIKWIDQAKGIFKLVDSKAVSRLWGMHKNKPGMNYETMGRAL 354
Query: 241 RYYYR 255
RYYY+
Sbjct: 355 RYYYQ 359
>Z79599-1|CAB01871.4| 493|Caenorhabditis elegans Hypothetical
protein C33A11.4 protein.
Length = 493
Score = 70.1 bits (164), Expect = 2e-12
Identities = 30/70 (42%), Positives = 47/70 (67%)
Frame = +1
Query: 43 NTNGRLLWDFLQQLLNDPTQRYTNYIAWKNRDTGVFKIVDPAGLAKLWGIQKNHLSMNYD 222
+T G LW+F++ L DP+ + + W++ GVF+IV+ LA+LWG +KN+ M Y+
Sbjct: 390 HTKGNKLWEFIRDALKDPST-CPSVVRWEDPIEGVFRIVESEKLARLWGARKNNEKMTYE 448
Query: 223 KMSRALRYYY 252
K+SRA+R YY
Sbjct: 449 KLSRAMRTYY 458
>Z79597-3|CAB01862.4| 493|Caenorhabditis elegans Hypothetical
protein C33A11.4 protein.
Length = 493
Score = 70.1 bits (164), Expect = 2e-12
Identities = 30/70 (42%), Positives = 47/70 (67%)
Frame = +1
Query: 43 NTNGRLLWDFLQQLLNDPTQRYTNYIAWKNRDTGVFKIVDPAGLAKLWGIQKNHLSMNYD 222
+T G LW+F++ L DP+ + + W++ GVF+IV+ LA+LWG +KN+ M Y+
Sbjct: 390 HTKGNKLWEFIRDALKDPST-CPSVVRWEDPIEGVFRIVESEKLARLWGARKNNEKMTYE 448
Query: 223 KMSRALRYYY 252
K+SRA+R YY
Sbjct: 449 KLSRAMRTYY 458
>U56966-1|AAA98717.1| 208|Caenorhabditis elegans Ets class
transcription factorprotein 5 protein.
Length = 208
Score = 68.5 bits (160), Expect = 5e-12
Identities = 35/75 (46%), Positives = 47/75 (62%)
Frame = +1
Query: 61 LWDFLQQLLNDPTQRYTNYIAWKNRDTGVFKIVDPAGLAKLWGIQKNHLSMNYDKMSRAL 240
LW FL +LL D + IAW+ + G FK+VDP +A+ WG +K+ +MNYDK+SRAL
Sbjct: 37 LWQFLLELLADAVNAHC--IAWEGSN-GEFKLVDPDEVARKWGERKSKPNMNYDKLSRAL 93
Query: 241 RYYYRLIFCAKSRAK 285
RYYY K + K
Sbjct: 94 RYYYDKNIMTKVQGK 108
>U97005-4|AAB52283.1| 314|Caenorhabditis elegans Hypothetical
protein F19F10.5 protein.
Length = 314
Score = 64.1 bits (149), Expect = 1e-10
Identities = 32/79 (40%), Positives = 49/79 (62%), Gaps = 1/79 (1%)
Frame = +1
Query: 19 FPNDMPESNTNGRL-LWDFLQQLLNDPTQRYTNYIAWKNRDTGVFKIVDPAGLAKLWGIQ 195
F ++ NG+ L +FL+ LL D + +++ I W N+DT F+++ P +A+LWG
Sbjct: 56 FKMSSKRTSPNGKQRLLNFLRGLLEDDS--HSDLITWSNKDTLEFQMLKPHKVAELWGAA 113
Query: 196 KNHLSMNYDKMSRALRYYY 252
+ MNYDKMSR LRY+Y
Sbjct: 114 TGNPGMNYDKMSRGLRYFY 132
>U97005-6|AAB52279.1| 242|Caenorhabditis elegans Hypothetical
protein F19F10.1 protein.
Length = 242
Score = 60.5 bits (140), Expect = 1e-09
Identities = 34/84 (40%), Positives = 47/84 (55%), Gaps = 1/84 (1%)
Frame = +1
Query: 40 SNTNGRL-LWDFLQQLLNDPTQRYTNYIAWKNRDTGVFKIVDPAGLAKLWGIQKNHLSMN 216
S+ G+L L FL+ LL D + ++ I W ++ VFK+ P +A+LWG + MN
Sbjct: 38 SSPTGKLRLLSFLRDLLEDESN--SDIIYWFDKSESVFKMSKPHKVAELWGAATGNPGMN 95
Query: 217 YDKMSRALRYYYRLIFCAKSRAKD 288
YDKMSR LRY+Y K KD
Sbjct: 96 YDKMSRGLRYFYTNNTLEKVPGKD 119
>U38937-1|AAA93079.1| 441|Caenorhabditis elegans LIN-1 protein.
Length = 441
Score = 60.1 bits (139), Expect = 2e-09
Identities = 28/64 (43%), Positives = 38/64 (59%)
Frame = +1
Query: 61 LWDFLQQLLNDPTQRYTNYIAWKNRDTGVFKIVDPAGLAKLWGIQKNHLSMNYDKMSRAL 240
LW FL +LL + + I W G F+++D +A+ WG +K MNYDK+SRAL
Sbjct: 66 LWQFLLELLQQ--DQNGDIIEWTRGTDGEFRLIDAEAVARKWGQRKAKPHMNYDKLSRAL 123
Query: 241 RYYY 252
RYYY
Sbjct: 124 RYYY 127
>U38935-1|AAB60254.1| 441|Caenorhabditis elegans LIN-1 protein.
Length = 441
Score = 60.1 bits (139), Expect = 2e-09
Identities = 28/64 (43%), Positives = 38/64 (59%)
Frame = +1
Query: 61 LWDFLQQLLNDPTQRYTNYIAWKNRDTGVFKIVDPAGLAKLWGIQKNHLSMNYDKMSRAL 240
LW FL +LL + + I W G F+++D +A+ WG +K MNYDK+SRAL
Sbjct: 66 LWQFLLELLQQ--DQNGDIIEWTRGTDGEFRLIDAEAVARKWGQRKAKPHMNYDKLSRAL 123
Query: 241 RYYY 252
RYYY
Sbjct: 124 RYYY 127
>AF067606-1|AAC17530.3| 441|Caenorhabditis elegans Abnormal cell
lineage protein 1 protein.
Length = 441
Score = 60.1 bits (139), Expect = 2e-09
Identities = 28/64 (43%), Positives = 38/64 (59%)
Frame = +1
Query: 61 LWDFLQQLLNDPTQRYTNYIAWKNRDTGVFKIVDPAGLAKLWGIQKNHLSMNYDKMSRAL 240
LW FL +LL + + I W G F+++D +A+ WG +K MNYDK+SRAL
Sbjct: 66 LWQFLLELLQQ--DQNGDIIEWTRGTDGEFRLIDAEAVARKWGQRKAKPHMNYDKLSRAL 123
Query: 241 RYYY 252
RYYY
Sbjct: 124 RYYY 127
>AF036689-2|AAB88319.1| 180|Caenorhabditis elegans Hypothetical
protein C50A2.4 protein.
Length = 180
Score = 51.6 bits (118), Expect = 7e-07
Identities = 26/86 (30%), Positives = 45/86 (52%), Gaps = 1/86 (1%)
Frame = +1
Query: 34 PESNTNGRLLWDFLQQLLNDPTQR-YTNYIAWKNRDTGVFKIVDPAGLAKLWGIQKNHLS 210
P S ++ +L Q +L + I W + + F++VD +A+LWG +K +L
Sbjct: 59 PRSTSHKKLRNYLFQMILKSENDKNVAKIIKWTKKSSLEFQMVDRQEVARLWGAEKGNLK 118
Query: 211 MNYDKMSRALRYYYRLIFCAKSRAKD 288
M+Y+ +SR++R YY+ K KD
Sbjct: 119 MDYEFLSRSIRSYYKSGIMRKIPGKD 144
>U64598-8|AAQ82848.1| 396|Caenorhabditis elegans Hypothetical
protein C52B9.2b protein.
Length = 396
Score = 35.5 bits (78), Expect = 0.046
Identities = 18/37 (48%), Positives = 25/37 (67%), Gaps = 1/37 (2%)
Frame = +1
Query: 148 FKIVDPAGLAKLWGIQK-NHLSMNYDKMSRALRYYYR 255
F IV+ ++KLWG +K N MNY K+SRA+R Y+
Sbjct: 305 FVIVNTKLVSKLWGNRKRNTKDMNYSKLSRAMRDKYK 341
Score = 31.5 bits (68), Expect = 0.75
Identities = 16/36 (44%), Positives = 24/36 (66%), Gaps = 1/36 (2%)
Frame = +1
Query: 148 FKIVDPAGLAKLWGIQK-NHLSMNYDKMSRALRYYY 252
F +V+ +AK+WG +K N M+Y K+SRA+R Y
Sbjct: 113 FVLVNKELVAKMWGNRKHNTKDMDYYKLSRAIREKY 148
>U64598-9|AAK39212.2| 174|Caenorhabditis elegans Hypothetical
protein C52B9.2a protein.
Length = 174
Score = 31.5 bits (68), Expect = 0.75
Identities = 16/36 (44%), Positives = 24/36 (66%), Gaps = 1/36 (2%)
Frame = +1
Query: 148 FKIVDPAGLAKLWGIQK-NHLSMNYDKMSRALRYYY 252
F +V+ +AK+WG +K N M+Y K+SRA+R Y
Sbjct: 46 FVLVNKELVAKMWGNRKHNTKDMDYYKLSRAIREKY 81
>AF025452-1|AAB70944.1| 411|Caenorhabditis elegans C-type lectin
protein 2 protein.
Length = 411
Score = 28.7 bits (61), Expect = 5.3
Identities = 11/35 (31%), Positives = 19/35 (54%)
Frame = +2
Query: 29 ICQSPIQMEDYCGTSYNNF*MTQRKDTQTILHGRT 133
+C++P ED C +YNN+ T +D + +T
Sbjct: 143 VCETPTTHEDSCYYNYNNYCYTFHRDLYSFTTAQT 177
>Z71180-1|CAA94891.1| 267|Caenorhabditis elegans Hypothetical
protein F22E12.3 protein.
Length = 267
Score = 28.3 bits (60), Expect = 7.0
Identities = 13/25 (52%), Positives = 15/25 (60%)
Frame = -2
Query: 543 LSCCVDDGGAVACQSVRVSAKALMQ 469
L CC D G ACQS+R S AL +
Sbjct: 120 LPCCRDRFGEQACQSLRKSQPALFE 144
>Z99283-1|CAB16536.2| 414|Caenorhabditis elegans Hypothetical
protein Y70C5C.2 protein.
Length = 414
Score = 27.9 bits (59), Expect = 9.2
Identities = 9/19 (47%), Positives = 12/19 (63%)
Frame = +2
Query: 29 ICQSPIQMEDYCGTSYNNF 85
+C+ PI ED C +YN F
Sbjct: 147 VCELPITFEDDCSNNYNGF 165
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,251,998
Number of Sequences: 27780
Number of extensions: 373806
Number of successful extensions: 921
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 879
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 919
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2019417216
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -