Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30090
         (820 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                80   3e-17
AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    25   1.1  
DQ288392-1|ABC41342.1|  120|Apis mellifera nanos protein.              23   2.6  
EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          23   4.5  
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      23   4.5  

>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 79.8 bits (188), Expect = 3e-17
 Identities = 36/71 (50%), Positives = 47/71 (66%)
 Frame = +1

Query: 61  LWDFLQQLLNDPTQRYTNYIAWKNRDTGVFKIVDPAGLAKLWGIQKNHLSMNYDKMSRAL 240
           LW+FL +LL D  +    YI W NR+ GVFK+VD   +++LWG+ KN   MNY+ M RAL
Sbjct: 460 LWEFLLKLLQD-REYCPRYIKWTNRERGVFKLVDSKAVSRLWGLHKNKPDMNYETMGRAL 518

Query: 241 RYYYRLIFCAK 273
           RYYY+    AK
Sbjct: 519 RYYYQRGILAK 529



 Score = 24.2 bits (50), Expect = 1.5
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +3

Query: 261 ILRKVQGERHCYQFLRNPTELKNI 332
           IL KV G+R  YQF+  P ++  I
Sbjct: 526 ILAKVDGQRLVYQFVDVPKDIIEI 549


>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 24.6 bits (51), Expect = 1.1
 Identities = 18/49 (36%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
 Frame = -3

Query: 191 IPHNLASPA-GSTILNTPVSLFFHAI*FVYLCVGSFRSCCKKSHNSLPF 48
           I +N A P   S ++NT V +  H    V+L  G FRS C       PF
Sbjct: 93  ILYNNADPQYSSAVINTNV-IVSHTGEVVWLSHGIFRSSCDIDVEFFPF 140


>DQ288392-1|ABC41342.1|  120|Apis mellifera nanos protein.
          Length = 120

 Score = 23.4 bits (48), Expect = 2.6
 Identities = 10/31 (32%), Positives = 15/31 (48%)
 Frame = +3

Query: 285 RHCYQFLRNPTELKNIKNISLLRQQMSPTRV 377
           ++C +  +NP  L  +    LLR  M   RV
Sbjct: 89  KYCPKGTKNPGTLATVNAFKLLRNSMGKRRV 119


>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 22.6 bits (46), Expect = 4.5
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = +1

Query: 94  PTQRYTNYIAWKNRDTG 144
           PT R+ N +A+  R+TG
Sbjct: 296 PTMRFRNGLAFPQRETG 312


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 22.6 bits (46), Expect = 4.5
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = +1

Query: 94  PTQRYTNYIAWKNRDTG 144
           PT R+ N +A+  R+TG
Sbjct: 296 PTMRFRNGLAFPQRETG 312


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 224,727
Number of Sequences: 438
Number of extensions: 4550
Number of successful extensions: 11
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26096055
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)