Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30089
         (785 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292339-1|CAL23151.2|  387|Tribolium castaneum gustatory recept...    26   0.39 
AM292338-1|CAL23150.2|  372|Tribolium castaneum gustatory recept...    26   0.39 
DQ659249-1|ABG47447.1|  383|Tribolium castaneum chitinase 9 prot...    22   4.8  

>AM292339-1|CAL23151.2|  387|Tribolium castaneum gustatory receptor
           candidate 18 protein.
          Length = 387

 Score = 25.8 bits (54), Expect = 0.39
 Identities = 13/53 (24%), Positives = 27/53 (50%)
 Frame = -3

Query: 633 ISELYKWSVLTRKNRSGMNRLTLTE*IRMFLPRSLSWL*PLYAVADGDVVYLI 475
           ++ LY W +LT+   SG+   T+ + +  F   S ++L  +  ++ G    L+
Sbjct: 46  LTSLYIWFILTQMTFSGVTSPTIMKFVLSFRTGSFTFLMVVAVLSSGTTFKLV 98


>AM292338-1|CAL23150.2|  372|Tribolium castaneum gustatory receptor
           candidate 17 protein.
          Length = 372

 Score = 25.8 bits (54), Expect = 0.39
 Identities = 13/53 (24%), Positives = 27/53 (50%)
 Frame = -3

Query: 633 ISELYKWSVLTRKNRSGMNRLTLTE*IRMFLPRSLSWL*PLYAVADGDVVYLI 475
           ++ LY W +LT+   SG+   T+ + +  F   S ++L  +  ++ G    L+
Sbjct: 46  LTSLYIWFILTQMTFSGVTSPTIMKFVLSFRTGSFTFLMVVAVLSSGTTFKLV 98


>DQ659249-1|ABG47447.1|  383|Tribolium castaneum chitinase 9
           protein.
          Length = 383

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 12/42 (28%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
 Frame = -3

Query: 729 HRLIEGRFSAATLASERA-HQYCELLGRRDFGIISELYKWSV 607
           +R   G+F+A  +      H     +G RD G++S L  W +
Sbjct: 33  YRPDNGKFTALDVDPTLCTHLLYAFVGLRDDGVVSVLDDWEI 74


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 167,179
Number of Sequences: 336
Number of extensions: 3323
Number of successful extensions: 12
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 21272645
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)