Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30089
(785 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1322.05c |||leukotriene A-4 hydrolase |Schizosaccharomyces p... 71 2e-13
SPBC1921.05 |ape2||aminopeptidase Ape2|Schizosaccharomyces pombe... 42 8e-05
SPAC3A12.05c |taf2||TATA-binding protein associated factor Taf2|... 28 1.3
SPAC110.01 |ppk1|SPAC140.05|serine/threonine protein kinase Ppk1... 27 3.0
SPAC23H3.10 |ssr2||SWI/SNF and RSC complex subunit Ssr2|Schizosa... 26 5.3
SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomy... 26 7.0
SPAC6C3.06c |||P-type ATPase, calcium transporting|Schizosacchar... 25 9.3
SPAC458.06 |||phosphoinositide binding protein|Schizosaccharomyc... 25 9.3
SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces po... 25 9.3
>SPCC1322.05c |||leukotriene A-4 hydrolase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 612
Score = 70.9 bits (166), Expect = 2e-13
Identities = 40/93 (43%), Positives = 56/93 (60%), Gaps = 7/93 (7%)
Frame = +1
Query: 499 RDC--VQWLQPAQTSGKKHPYLFSQCQPIHARSILPCQDTPFVKFTYDAEVTAPEEFTVL 672
+DC +Q+L+P QT G K PY+FS+CQ IHARS +PCQDTP VK ++ + + V+
Sbjct: 112 KDCTALQFLKPEQTIGGKFPYVFSECQAIHARSFIPCQDTPSVKVPCTFKIRS--KLPVI 169
Query: 673 MSALR-GESR----STKTTFNQPMPLPSYLLAI 756
S + G + S + F Q P+PSYL I
Sbjct: 170 ASGIPCGTANFCNGSLEYLFEQKNPIPSYLFCI 202
>SPBC1921.05 |ape2||aminopeptidase Ape2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 882
Score = 42.3 bits (95), Expect = 8e-05
Identities = 25/72 (34%), Positives = 39/72 (54%), Gaps = 4/72 (5%)
Frame = +1
Query: 562 SQCQPIHARSILPCQDTPFVKFTYDAEVTAPEEFTVL--MSALRGESRSTKTT--FNQPM 729
+Q +P AR PC D P +K T+ ++TA E +T+L M+A+ + T F +
Sbjct: 141 TQMEPTSARRAFPCWDEPALKATFTIDITAKENYTILSNMNAVEETVKDGLKTARFAETC 200
Query: 730 PLPSYLLAIAVA 765
+ +YLLA VA
Sbjct: 201 RMSTYLLAWIVA 212
>SPAC3A12.05c |taf2||TATA-binding protein associated factor
Taf2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1174
Score = 28.3 bits (60), Expect = 1.3
Identities = 14/46 (30%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
Frame = +1
Query: 544 KHPYLFSQCQ--PIHARSILPCQDTPFVKFTYDAEVTAPEEFTVLM 675
++P++F+ P S LPC D + + T++ E+T P+ + LM
Sbjct: 146 RYPHVFTNNSIIPYSTCSWLPCVDGIWERSTWEFEITLPKTLSSLM 191
>SPAC110.01 |ppk1|SPAC140.05|serine/threonine protein kinase Ppk1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1023
Score = 27.1 bits (57), Expect = 3.0
Identities = 14/46 (30%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Frame = -2
Query: 349 YCQFTRIKDHVSDILEHVNVESGGSV*DFVF-KSTFNDKVTCFITA 215
Y F + K H +L++VN GG + D++ + D V C + A
Sbjct: 563 YLDFVKTKHHFGIVLDYVN---GGELFDYILARRRLEDSVACRLFA 605
>SPAC23H3.10 |ssr2||SWI/SNF and RSC complex subunit
Ssr2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 503
Score = 26.2 bits (55), Expect = 5.3
Identities = 12/42 (28%), Positives = 23/42 (54%)
Frame = +2
Query: 458 DKLKIKIKYTTSPSATAYNGYSQLKLRGRNILIYSVSVSRFM 583
+KL++K+K S+L LRG+N+L+ +S + +
Sbjct: 401 EKLQLKMKVLEQLEKMCSLELSELDLRGKNLLLSRLSTKKML 442
>SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 648
Score = 25.8 bits (54), Expect = 7.0
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = -3
Query: 270 KTLFSNPRSTIKSRVLLQLVQAAKRKTD 187
K L +NP+S + SRVL L++ A + D
Sbjct: 351 KFLDANPQSAVASRVLEGLIECAPAEKD 378
>SPAC6C3.06c |||P-type ATPase, calcium
transporting|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1033
Score = 25.4 bits (53), Expect = 9.3
Identities = 14/54 (25%), Positives = 26/54 (48%)
Frame = +2
Query: 257 ENKVLNGSATLDVDVLQDIGDVVLDSSELTIESIELDGAQLTYKLDDPVPNYGS 418
++ V NG +D +D + ++ S E + I LD + ++ P P YG+
Sbjct: 40 QSSVSNGHGLYSLD--RDETESLMSSHEASNAGISLDSSFRVIQVGQPEPQYGN 91
>SPAC458.06 |||phosphoinositide binding protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 364
Score = 25.4 bits (53), Expect = 9.3
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = -3
Query: 282 ADPFKTLFSNPRSTIKSRVLLQLVQAAKR 196
A FK+ + PR T R LL+L+ + KR
Sbjct: 268 ASEFKSSTTEPRQTHWKRKLLKLIDSGKR 296
>SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 897
Score = 25.4 bits (53), Expect = 9.3
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = +3
Query: 141 SRFSQVPVMGAFSPLDPSSFSRPEQAVIKHVTLSLNVDL 257
+R + P + P PSS S P + I H T S++ D+
Sbjct: 107 TRLTSTPSNSSSLPSIPSSSSTPSISSIPHTTSSVSNDI 145
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,986,365
Number of Sequences: 5004
Number of extensions: 58083
Number of successful extensions: 181
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 170
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 180
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 381366860
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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