Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30089
(785 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0470 + 34164873-34165856,34166335-34166568,34166680-341670... 65 7e-11
02_02_0080 + 6598427-6598663,6599246-6599391,6599567-6599669,660... 34 0.11
08_02_0585 + 19014674-19014871,19014987-19015132,19016742-190168... 31 0.79
09_03_0038 + 11790075-11790302,11790397-11790542,11790915-117910... 31 1.0
08_02_0009 + 11216532-11218687,11220727-11225998 31 1.4
08_02_0003 + 11180421-11180757,11180773-11185715 31 1.4
08_02_0002 + 11173365-11173512,11173528-11178470 31 1.4
11_03_0065 - 9522478-9525335,9525513-9526028,9526432-9527247,952... 30 1.8
08_01_1069 + 10916376-10916448,10917331-10918031,10918222-109184... 29 4.2
11_01_0298 - 2231063-2232015,2232124-2232798,2232918-2232946,223... 28 7.3
09_03_0039 + 11799277-11799486,11799565-11799710,11800758-118008... 28 9.7
01_06_1629 - 38749184-38749303,38749389-38749479,38749555-387496... 28 9.7
01_06_0147 + 26997641-26997688,26997783-26997857,26997966-269980... 28 9.7
>03_06_0470 +
34164873-34165856,34166335-34166568,34166680-34167006,
34168426-34168716
Length = 611
Score = 64.9 bits (151), Expect = 7e-11
Identities = 26/58 (44%), Positives = 38/58 (65%)
Frame = +1
Query: 508 VQWLQPAQTSGKKHPYLFSQCQPIHARSILPCQDTPFVKFTYDAEVTAPEEFTVLMSA 681
+QWL P QT+ P++FSQCQ IHARS+ PC DTP + T+D + P + + + +A
Sbjct: 111 LQWLSPPQTASSL-PFVFSQCQSIHARSVFPCHDTPAARITFDLLLNVPTQLSAVAAA 167
>02_02_0080 +
6598427-6598663,6599246-6599391,6599567-6599669,
6600407-6600593,6600699-6600792,6601290-6601443,
6601751-6601855,6601937-6602053,6602248-6602361,
6602891-6603073,6603207-6603486,6603565-6603686,
6603763-6603860,6603941-6604118,6604439-6604553,
6604656-6604723,6604825-6604902,6604986-6605060,
6605156-6605338
Length = 878
Score = 34.3 bits (75), Expect = 0.11
Identities = 23/82 (28%), Positives = 36/82 (43%), Gaps = 4/82 (4%)
Frame = +1
Query: 529 QTSGKKHPYLFSQCQPIHARSILPCQDTPFVKFTYDAEVTAPEEFTVLMSALRGESRST- 705
+ +G+K +Q +P AR PC D P K + + P E L + E +
Sbjct: 131 ELNGEKKNMAVTQFEPADARRCFPCWDEPSFKAIFKITLEVPSETVALSNMPVVEEKVNG 190
Query: 706 --KTTFNQPMPLPS-YLLAIAV 762
K + Q P+ S YL+A+ V
Sbjct: 191 LIKAVYFQETPIMSTYLVAVIV 212
>08_02_0585 +
19014674-19014871,19014987-19015132,19016742-19016844,
19017064-19017250,19017368-19017461,19017570-19017723,
19018076-19018192,19018276-19018296,19019096-19019209,
19019970-19020152,19021032-19021239,19021326-19021447,
19021559-19021656,19021875-19022052,19022130-19022244,
19022331-19022398,19022526-19022603,19023737-19023814,
19023897-19024082
Length = 815
Score = 31.5 bits (68), Expect = 0.79
Identities = 23/79 (29%), Positives = 33/79 (41%), Gaps = 4/79 (5%)
Frame = +1
Query: 538 GKKHPYLFSQCQPIHARSILPCQDTPFVKFTYDAEVTAPEEFTVL--MSALRGESRS-TK 708
G+ +Q + AR PC D P K + + P E L M ++ K
Sbjct: 121 GESRNMAVTQFEAADARRCFPCWDEPAFKAKFKLTLEVPSELVALSNMPVIKETVHGPLK 180
Query: 709 TTFNQPMPLPS-YLLAIAV 762
T + + PL S YL+AI V
Sbjct: 181 TVYYEESPLMSTYLVAIVV 199
>09_03_0038 +
11790075-11790302,11790397-11790542,11790915-11791017,
11791148-11791334,11791466-11791559,11791702-11791855,
11792189-11792305,11792695-11792808,11793629-11793811,
11794209-11794494,11794592-11794713,11794746-11794802,
11794803-11794900,11795036-11795213,11795355-11795455,
11795530-11795629,11795751-11795828,11796785-11796862,
11796956-11797138
Length = 868
Score = 31.1 bits (67), Expect = 1.0
Identities = 22/71 (30%), Positives = 31/71 (43%), Gaps = 4/71 (5%)
Frame = +1
Query: 562 SQCQPIHARSILPCQDTPFVKFTYDAEVTAPEEFTVLMS---ALRGESRSTKTTFNQPMP 732
+Q + + AR PC D P K + + P E L + A + KT + P
Sbjct: 139 TQFEAVDARRCFPCWDEPAFKAKFKLTLEVPSELVALSNMPVACETIAGPIKTIHYEESP 198
Query: 733 LPS-YLLAIAV 762
L S YL+AI V
Sbjct: 199 LMSTYLVAIVV 209
>08_02_0009 + 11216532-11218687,11220727-11225998
Length = 2475
Score = 30.7 bits (66), Expect = 1.4
Identities = 13/38 (34%), Positives = 23/38 (60%)
Frame = +2
Query: 386 KLDDPVPNYGSKLTIQLPKRASSGDKLKIKIKYTTSPS 499
+L D + N+G+K ++LP + G ++ +KIK T S
Sbjct: 1728 QLRDAITNFGNKYIVRLPFKEILGIRIPVKIKLTPKVS 1765
>08_02_0003 + 11180421-11180757,11180773-11185715
Length = 1759
Score = 30.7 bits (66), Expect = 1.4
Identities = 13/38 (34%), Positives = 23/38 (60%)
Frame = +2
Query: 386 KLDDPVPNYGSKLTIQLPKRASSGDKLKIKIKYTTSPS 499
+L D + N+G+K ++LP + G ++ +KIK T S
Sbjct: 1012 QLRDAITNFGNKYIVRLPFKEILGIRIPVKIKLTPKVS 1049
>08_02_0002 + 11173365-11173512,11173528-11178470
Length = 1696
Score = 30.7 bits (66), Expect = 1.4
Identities = 13/38 (34%), Positives = 23/38 (60%)
Frame = +2
Query: 386 KLDDPVPNYGSKLTIQLPKRASSGDKLKIKIKYTTSPS 499
+L D + N+G+K ++LP + G ++ +KIK T S
Sbjct: 949 QLRDAITNFGNKYIVRLPFKEILGIRIPVKIKLTPKVS 986
>11_03_0065 -
9522478-9525335,9525513-9526028,9526432-9527247,
9527440-9527767
Length = 1505
Score = 30.3 bits (65), Expect = 1.8
Identities = 12/38 (31%), Positives = 23/38 (60%)
Frame = +2
Query: 386 KLDDPVPNYGSKLTIQLPKRASSGDKLKIKIKYTTSPS 499
+L D + N+G+K ++LP + G ++ +K+K T S
Sbjct: 763 QLRDAITNFGNKYIVRLPFKEILGIRIPVKVKLTPKVS 800
>08_01_1069 +
10916376-10916448,10917331-10918031,10918222-10918443,
10918526-10919351,10919437-10919574,10920431-10920569,
10920655-10920781,10921895-10921936,10922089-10922160,
10922491-10922589,10922694-10922735,10922947-10923027,
10923129-10923179,10923265-10923346,10923741-10923835,
10924739-10924810,10924907-10925023,10925176-10925244,
10925507-10925573,10925709-10925950
Length = 1118
Score = 29.1 bits (62), Expect = 4.2
Identities = 22/83 (26%), Positives = 35/83 (42%)
Frame = +2
Query: 365 DGAQLTYKLDDPVPNYGSKLTIQLPKRASSGDKLKIKIKYTTSPSATAYNGYSQLKLRGR 544
D ++L + +P+ K + + RAS KI + Y T ++G L+ R
Sbjct: 705 DMSELEHLFSAVLPSSDGKRSDKSGSRASGSKPEKIHLIYATEDFCFIHDGTIDLR-RAN 763
Query: 545 NILIYSVSVSRFMPDLFFRVKTL 613
N I V +PDL + TL
Sbjct: 764 NCGIMLTKVKMPLPDLMSAILTL 786
>11_01_0298 -
2231063-2232015,2232124-2232798,2232918-2232946,
2233053-2233513,2233593-2233717,2233801-2234098,
2235004-2236234,2236562-2237233,2237329-2238539
Length = 1884
Score = 28.3 bits (60), Expect = 7.3
Identities = 20/64 (31%), Positives = 33/64 (51%), Gaps = 3/64 (4%)
Frame = +2
Query: 284 TLDVDVLQDIGDVVLDSSELTIESIELDG--AQLTYKLDDPV-PNYGSKLTIQLPKRASS 454
TL + +LQ + D V+DS EL E E +G ++ Y++D GS+ + +A +
Sbjct: 453 TLKLRILQLLCDHVIDSEELKTELEEREGYSEEMEYEMDSSTFAEVGSRSVLTRGSKAPA 512
Query: 455 GDKL 466
KL
Sbjct: 513 CKKL 516
>09_03_0039 +
11799277-11799486,11799565-11799710,11800758-11800860,
11800996-11801182,11801299-11801392,11801530-11801683,
11801963-11802067,11802151-11802267,11802688-11802801,
11803171-11803260,11803875-11804057,11809196-11809550,
11809574-11809643,11809993-11810167,11810251-11810351,
11810390-11810516,11810639-11810716,11811926-11812270
Length = 917
Score = 27.9 bits (59), Expect = 9.7
Identities = 21/71 (29%), Positives = 32/71 (45%), Gaps = 4/71 (5%)
Frame = +1
Query: 562 SQCQPIHARSILPCQDTPFVKFTYDAEVTAPEEFTVLMS-ALRGE--SRSTKTTFNQPMP 732
+Q + + AR PC D P K + + P E L + + E + KT + P
Sbjct: 133 TQFESVDARRCFPCWDEPSFKAKFKLTLEVPSELVALSNMPIVNEKIAGPIKTVEYEESP 192
Query: 733 LPS-YLLAIAV 762
+ S YL+AI V
Sbjct: 193 VMSTYLVAIVV 203
>01_06_1629 -
38749184-38749303,38749389-38749479,38749555-38749630,
38749860-38749932,38750488-38750580,38750827-38750883,
38751406-38751492,38751600-38751674,38751779-38751826
Length = 239
Score = 27.9 bits (59), Expect = 9.7
Identities = 20/56 (35%), Positives = 30/56 (53%)
Frame = +2
Query: 278 SATLDVDVLQDIGDVVLDSSELTIESIELDGAQLTYKLDDPVPNYGSKLTIQLPKR 445
SA +D V+ GDVVLD +E+T ++I+L GA L D +L + P +
Sbjct: 9 SALVDNHVVP--GDVVLDLTEMTNQTIKL-GAGLRQDCDTIQATSAGRLRLSKPNK 61
>01_06_0147 +
26997641-26997688,26997783-26997857,26997966-26998052,
26998566-26998622,26998867-26998959,26999528-26999600,
26999830-26999905,27000217-27000280,27000951-27000980,
27001251-27001367,27002742-27002782,27002870-27003176,
27003279-27003368,27003479-27003541,27003678-27003752,
27003922-27003984,27004714-27004784,27004885-27005068
Length = 537
Score = 27.9 bits (59), Expect = 9.7
Identities = 20/56 (35%), Positives = 30/56 (53%)
Frame = +2
Query: 278 SATLDVDVLQDIGDVVLDSSELTIESIELDGAQLTYKLDDPVPNYGSKLTIQLPKR 445
SA +D V+ GDVVLD +E+T ++I+L GA L D +L + P +
Sbjct: 9 SALVDNHVVP--GDVVLDLAEMTNQTIKL-GAGLRQDCDTIQATSAGRLRLSKPSK 61
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,134,371
Number of Sequences: 37544
Number of extensions: 367178
Number of successful extensions: 930
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 909
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 930
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2115411120
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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