Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30089
(785 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_7564| Best HMM Match : Peptidase_M1 (HMM E-Value=6.8e-08) 102 3e-22
SB_5727| Best HMM Match : Peptidase_M1 (HMM E-Value=0) 44 1e-04
SB_9130| Best HMM Match : Peptidase_M1 (HMM E-Value=0) 37 0.021
SB_51392| Best HMM Match : Peptidase_M1 (HMM E-Value=0) 36 0.037
SB_9412| Best HMM Match : Peptidase_M1 (HMM E-Value=3.1e-07) 36 0.037
SB_45004| Best HMM Match : Peptidase_M1 (HMM E-Value=0.0054) 32 0.61
SB_13904| Best HMM Match : Peptidase_M1 (HMM E-Value=3.7e-08) 31 1.1
SB_11560| Best HMM Match : Peptidase_M1 (HMM E-Value=0) 31 1.1
SB_5854| Best HMM Match : Pkinase_Tyr (HMM E-Value=4.3e-17) 29 4.3
SB_42349| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.5
SB_49583| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.5
SB_39845| Best HMM Match : Methyltransf_10 (HMM E-Value=0) 28 7.5
SB_8223| Best HMM Match : RVT_1 (HMM E-Value=4e-27) 28 7.5
SB_30707| Best HMM Match : ARID (HMM E-Value=4e-35) 28 9.9
SB_39362| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.9
SB_14689| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.9
SB_6571| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.9
SB_3438| Best HMM Match : RVT_1 (HMM E-Value=1.3e-30) 28 9.9
>SB_7564| Best HMM Match : Peptidase_M1 (HMM E-Value=6.8e-08)
Length = 457
Score = 102 bits (245), Expect = 3e-22
Identities = 49/92 (53%), Positives = 62/92 (67%), Gaps = 7/92 (7%)
Frame = +1
Query: 508 VQWLQPAQTSGKKHPYLFSQCQPIHARSILPCQDTPFVKFTYDAEVTAPEEFTVLMSALR 687
+QWL P QTSGKKHPY+F+QCQ IHARSI+PCQD+P VK TY A+V+ P++ LMSA R
Sbjct: 65 LQWLTPEQTSGKKHPYMFTQCQAIHARSIIPCQDSPGVKATYSAKVSVPKDLVALMSAAR 124
Query: 688 GESRSTKT-------TFNQPMPLPSYLLAIAV 762
S F Q + +PSYL+A+ V
Sbjct: 125 TGSELDHQKQDLMTYQFEQKVAIPSYLIALVV 156
Score = 46.4 bits (105), Expect = 3e-05
Identities = 25/64 (39%), Positives = 36/64 (56%), Gaps = 2/64 (3%)
Frame = +2
Query: 323 VLDSSELTIESIEL--DGAQLTYKLDDPVPNYGSKLTIQLPKRASSGDKLKIKIKYTTSP 496
VLD+ +L ++S+ + QLT+ L +G+ L I LP SG +L I I Y TSP
Sbjct: 1 VLDTRDLNVQSVAVRPSNDQLTFSLGSKHKAFGTPLEISLPPGLKSGARLSIAISYRTSP 60
Query: 497 SATA 508
A+A
Sbjct: 61 DASA 64
>SB_5727| Best HMM Match : Peptidase_M1 (HMM E-Value=0)
Length = 904
Score = 44.4 bits (100), Expect = 1e-04
Identities = 26/85 (30%), Positives = 42/85 (49%), Gaps = 4/85 (4%)
Frame = +1
Query: 520 QPAQTSGKKHPYLFSQCQPIHARSILPCQDTPFVKFTYDAEVTAPEEFTVL--MSALRGE 693
Q GK +Q QP AR PC D P +K T++ + +F + M + E
Sbjct: 350 QYTHKDGKNVTIATTQFQPTDARKAFPCLDEPALKATFNITIEHRPDFIAISNMPIWKNE 409
Query: 694 SRSTKTT--FNQPMPLPSYLLAIAV 762
+R+ +T F + + +P+YLLA+ V
Sbjct: 410 TRNGRTVDHFEKTVVMPTYLLAMVV 434
>SB_9130| Best HMM Match : Peptidase_M1 (HMM E-Value=0)
Length = 890
Score = 36.7 bits (81), Expect = 0.021
Identities = 20/82 (24%), Positives = 41/82 (50%), Gaps = 4/82 (4%)
Frame = +1
Query: 529 QTSGKKHPYLFSQCQPIHARSILPCQDTPFVKFTYDAEVTAPEEFTVLMSALRGESR--- 699
Q +G++ ++ +Q +P+ AR PC D P +K T++ + ++ L + +S+
Sbjct: 218 QNNGQRVYFVATQFEPVKAREAFPCFDEPGMKATFNITIAHRPDYVALSNMPIYQSKIID 277
Query: 700 -STKTTFNQPMPLPSYLLAIAV 762
F Q + + +YL+A V
Sbjct: 278 GQRHDYFEQSVVMSTYLVAFTV 299
>SB_51392| Best HMM Match : Peptidase_M1 (HMM E-Value=0)
Length = 791
Score = 35.9 bits (79), Expect = 0.037
Identities = 20/74 (27%), Positives = 36/74 (48%), Gaps = 4/74 (5%)
Frame = +1
Query: 553 YLFSQCQPIHARSILPCQDTPFVKFTYDAEVTAPEEFTVLMSALRGES----RSTKTTFN 720
++ +Q +P +AR+ PC D P +K T++ +T P + + + S T T+F
Sbjct: 131 FVATQFEPHYARTAFPCFDEPALKATFNTTITHPSDMQAFTNGAQVSSAPKGNLTMTSFA 190
Query: 721 QPMPLPSYLLAIAV 762
+ +YL A V
Sbjct: 191 TSPKMQTYLNAFDV 204
>SB_9412| Best HMM Match : Peptidase_M1 (HMM E-Value=3.1e-07)
Length = 1844
Score = 35.9 bits (79), Expect = 0.037
Identities = 19/60 (31%), Positives = 29/60 (48%)
Frame = +1
Query: 550 PYLFSQCQPIHARSILPCQDTPFVKFTYDAEVTAPEEFTVLMSALRGESRSTKTTFNQPM 729
P +FS I+ RS++PCQ+ P T+ A + P LMS +T T ++ M
Sbjct: 1376 PCVFSPGAYINNRSLMPCQEPPIAMSTWQAAIHVPHGCMALMSGNPVTMETTATDTDKAM 1435
>SB_45004| Best HMM Match : Peptidase_M1 (HMM E-Value=0.0054)
Length = 236
Score = 31.9 bits (69), Expect = 0.61
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = +1
Query: 553 YLFSQCQPIHARSILPCQDTPFVKFTYDAEVT 648
Y+ SQ P ARS+ PC D P K T++ ++
Sbjct: 70 YVASQFGPAEARSVFPCFDEPAFKATFNLTIS 101
>SB_13904| Best HMM Match : Peptidase_M1 (HMM E-Value=3.7e-08)
Length = 326
Score = 31.1 bits (67), Expect = 1.1
Identities = 18/72 (25%), Positives = 33/72 (45%), Gaps = 5/72 (6%)
Frame = +1
Query: 562 SQCQPIHARSILPCQDTPFVKFTYDAEVTAPEEFTVL-----MSALRGESRSTKTTFNQP 726
+Q + AR PC D P +K T++ + + L S+ R +++ +
Sbjct: 217 TQFERSDARKAFPCLDEPALKATFNVTIAHHARYVALCNMPISSSTRVDNQIVDQYYQTS 276
Query: 727 MPLPSYLLAIAV 762
+ +P+YLLA V
Sbjct: 277 VVMPTYLLAFVV 288
>SB_11560| Best HMM Match : Peptidase_M1 (HMM E-Value=0)
Length = 854
Score = 31.1 bits (67), Expect = 1.1
Identities = 21/76 (27%), Positives = 35/76 (46%), Gaps = 12/76 (15%)
Frame = +1
Query: 571 QPIHARSILPCQDTPFVKFTYDAEVTAPEEFTVL------MSALRGES------RSTKTT 714
+P AR LPC D P +K T+ + ++T L ++ R + S +
Sbjct: 250 EPTDARKALPCFDEPAMKATFTTTIVHEPDYTALTNMPEAINKTRSDGLIETRYHSNEGW 309
Query: 715 FNQPMPLPSYLLAIAV 762
F + +P+ +YLLA V
Sbjct: 310 FMKSVPMSTYLLAFIV 325
>SB_5854| Best HMM Match : Pkinase_Tyr (HMM E-Value=4.3e-17)
Length = 1850
Score = 29.1 bits (62), Expect = 4.3
Identities = 26/93 (27%), Positives = 42/93 (45%), Gaps = 6/93 (6%)
Frame = +3
Query: 60 PVRLINWKHSKVRHSLINFGLHTKQ--TRSRFSQVP--VMGAFSPLDPSSFSRPEQAVIK 227
PVR ++++ + HS++N G T T + P + A S D R E V+
Sbjct: 146 PVRKVSYRPRALSHSIVNRGFSTDSVWTADHLFKNPDGFLRALSAADEMERQRLEN-VLF 204
Query: 228 HVTLSLNVDLKTKS*TD--PPLSTLTCSKISET 320
+ L+L + + D L+TL C+ I ET
Sbjct: 205 QILLTLEKEHRAIKSKDIYNTLTTLACNDIGET 237
>SB_42349| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 980
Score = 28.3 bits (60), Expect = 7.5
Identities = 11/31 (35%), Positives = 20/31 (64%)
Frame = +3
Query: 513 MVTASSNFGEETSLSIQSVSADSCQIYSSVS 605
+VT++ NFGE T ++ + +SC+ +VS
Sbjct: 599 VVTSNGNFGETTIRDVRGCAVESCREIETVS 629
>SB_49583| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 163
Score = 28.3 bits (60), Expect = 7.5
Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Frame = -2
Query: 244 NDKVTCFITACSGREKEDGSRGLKAPMTGT*LKRDLVCFVCKPK--FIREC 98
+DK C+ +C +K SR K P +G RD+VC+ C F R+C
Sbjct: 23 DDKPVCY--SCG--KKGHISRDCKNPSSGGSRNRDVVCYRCNMSGHFARDC 69
>SB_39845| Best HMM Match : Methyltransf_10 (HMM E-Value=0)
Length = 493
Score = 28.3 bits (60), Expect = 7.5
Identities = 12/35 (34%), Positives = 18/35 (51%)
Frame = +3
Query: 222 IKHVTLSLNVDLKTKS*TDPPLSTLTCSKISETWS 326
IK + L L +D+K S + TC+ + TWS
Sbjct: 302 IKQLFLQLKIDIKETSHKTTDSISFTCTAVENTWS 336
>SB_8223| Best HMM Match : RVT_1 (HMM E-Value=4e-27)
Length = 1307
Score = 28.3 bits (60), Expect = 7.5
Identities = 23/78 (29%), Positives = 35/78 (44%), Gaps = 8/78 (10%)
Frame = +3
Query: 552 LSIQSVSADSCQIYSSVSRHSICKVHL*CRSHGARG--------VHSTDERAQRRESQH* 707
LS +S++ S + +S HS+C+V L +HG RG S ER Q R
Sbjct: 1147 LSTKSMATFSRKRFSGTELHSLCRVAL-SNTHGIRGGCLQGCRCALSASERRQVRYENRV 1205
Query: 708 NDLQSADAFAVVSFGHCG 761
+ + +A+ G CG
Sbjct: 1206 GAENATEQWALRYQGKCG 1223
>SB_30707| Best HMM Match : ARID (HMM E-Value=4e-35)
Length = 1338
Score = 27.9 bits (59), Expect = 9.9
Identities = 15/29 (51%), Positives = 21/29 (72%), Gaps = 1/29 (3%)
Frame = -2
Query: 580 ESADTD*-IDKDVSSPKFELAVTIVRSRG 497
ES D++ ID +V+SP+ ELAV +V S G
Sbjct: 414 ESIDSEVDIDDEVTSPESELAVDVVNSPG 442
>SB_39362| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 220
Score = 27.9 bits (59), Expect = 9.9
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = +2
Query: 689 ARVAALKRPSISRCLCRRIFW 751
ARV A+ P+I R +C R FW
Sbjct: 3 ARVIAVPSPAIRRSICSRQFW 23
>SB_14689| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1900
Score = 27.9 bits (59), Expect = 9.9
Identities = 14/36 (38%), Positives = 22/36 (61%)
Frame = +3
Query: 552 LSIQSVSADSCQIYSSVSRHSICKVHL*CRSHGARG 659
LS +S++ S + +S HS+C+V L +HG RG
Sbjct: 433 LSTKSMATFSRKRFSGTELHSLCRVAL-SNTHGIRG 467
>SB_6571| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 182
Score = 27.9 bits (59), Expect = 9.9
Identities = 9/19 (47%), Positives = 12/19 (63%)
Frame = +1
Query: 544 KHPYLFSQCQPIHARSILP 600
KH +LFS C P H + +P
Sbjct: 14 KHQHLFSSCHPHHTKKAIP 32
>SB_3438| Best HMM Match : RVT_1 (HMM E-Value=1.3e-30)
Length = 1405
Score = 27.9 bits (59), Expect = 9.9
Identities = 14/31 (45%), Positives = 18/31 (58%)
Frame = +2
Query: 302 LQDIGDVVLDSSELTIESIELDGAQLTYKLD 394
+Q GDV S E IE+DG +T+KLD
Sbjct: 113 VQKPGDVSKSSVEYWKAEIEVDGQPITFKLD 143
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,503,283
Number of Sequences: 59808
Number of extensions: 444941
Number of successful extensions: 1124
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1048
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1123
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2155861620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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