Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30089
         (785 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g13520.1 68418.m01561 peptidase M1 family protein similar to ...    78   8e-15
At4g33090.1 68417.m04715 aminopeptidase M similar to SP|Q11011 P...    35   0.053
At4g10710.1 68417.m01751 transcriptional regulator-related simil...    31   0.87 
At3g17630.1 68416.m02252 cation/hydrogen exchanger, putative (CH...    31   0.87 
At1g68280.1 68414.m07799 thioesterase-related contains domain si...    30   2.0  
At3g10740.1 68416.m01293 glycosyl hydrolase family protein 51 si...    28   6.1  
At3g44670.1 68416.m04804 disease resistance protein RPP1-Ws[A,C]...    28   8.1  
At1g73960.1 68414.m08565 expressed protein similar to TATA bindi...    28   8.1  

>At5g13520.1 68418.m01561 peptidase M1 family protein similar to
           SP|P09960 Leukotriene A-4 hydrolase (EC 3.3.2.6) (LTA-4
           hydrolase) {Homo sapiens}; contains Pfam profile
           PF01433: Peptidase family M1
          Length = 616

 Score = 77.8 bits (183), Expect = 8e-15
 Identities = 31/58 (53%), Positives = 39/58 (67%)
 Frame = +1

Query: 508 VQWLQPAQTSGKKHPYLFSQCQPIHARSILPCQDTPFVKFTYDAEVTAPEEFTVLMSA 681
           +QWL P QT  K HPY+++QCQ IHARSI PCQDTP  +  YD  +  P   + +MSA
Sbjct: 109 LQWLSPLQTFSKLHPYVYTQCQAIHARSIFPCQDTPAARIRYDVVMNIPNSLSAVMSA 166



 Score = 29.5 bits (63), Expect = 2.6
 Identities = 15/41 (36%), Positives = 21/41 (51%)
 Frame = +3

Query: 177 SPLDPSSFSRPEQAVIKHVTLSLNVDLKTKS*TDPPLSTLT 299
           +P+DP SF+     +  HV LSL +D  T       L TL+
Sbjct: 2   APIDPHSFTDSSHPLTTHVALSLYLDFNTSIIHGSALLTLS 42


>At4g33090.1 68417.m04715 aminopeptidase M similar to SP|Q11011
           Puromycin-sensitive aminopeptidase (EC 3.4.11.-) (PSA)
           {Mus musculus}; contains Pfam profile PF01433: Peptidase
           family M1
          Length = 879

 Score = 35.1 bits (77), Expect = 0.053
 Identities = 24/80 (30%), Positives = 36/80 (45%), Gaps = 4/80 (5%)
 Frame = +1

Query: 535 SGKKHPYLFSQCQPIHARSILPCQDTPFVKFTYDAEVTAPEEFTVLMSALRGESR---ST 705
           +G+K     +Q +P  AR   PC D P  K T+   +  P +   L +    E +   + 
Sbjct: 126 NGEKKNMAVTQFEPADARRCFPCWDEPACKATFKITLEVPTDLVALSNMPIMEEKVNGNL 185

Query: 706 KTTFNQPMPLPS-YLLAIAV 762
           K    Q  P+ S YL+AI V
Sbjct: 186 KIVSYQESPIMSTYLVAIVV 205


>At4g10710.1 68417.m01751 transcriptional regulator-related similar
           to chromatin-specific transcription elongation factor
           FACT 140 kDa subunit (GI:5499741) [Homo sapiens]
          Length = 1074

 Score = 31.1 bits (67), Expect = 0.87
 Identities = 19/36 (52%), Positives = 21/36 (58%)
 Frame = +1

Query: 112 TLVYTQNKQGHASVKFQSWVLSVLWIRLPFRGLNKL 219
           TLV TQ K   A  KF+   LS LWIR PF G  K+
Sbjct: 661 TLV-TQEKLQLAGNKFKPLRLSELWIRPPFSGRKKI 695


>At3g17630.1 68416.m02252 cation/hydrogen exchanger, putative
           (CHX19) similar to putative Na+/H+-exchanging protein
           GB:CAA23036 from [Arabidopsis thaliana]; monovalent
           cation:proton antiporter family 2 (CPA2) member,
           PMID:11500563
          Length = 857

 Score = 31.1 bits (67), Expect = 0.87
 Identities = 17/45 (37%), Positives = 24/45 (53%)
 Frame = -1

Query: 461 YHHLRLVSAIV*SIWSHSSALGHLICTSIEHRLVLLILLSVHSNQ 327
           Y HLR V+    +  S  S++   ICTS   + V +ILL  H +Q
Sbjct: 588 YQHLRAVAVRPMTAISGLSSIHEDICTSAHQKRVAMILLPFHKHQ 632


>At1g68280.1 68414.m07799 thioesterase-related contains domain
           similarity  with PF03061: thioesterase family protein
          Length = 188

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 14/47 (29%), Positives = 26/47 (55%)
 Frame = +2

Query: 416 SKLTIQLPKRASSGDKLKIKIKYTTSPSATAYNGYSQLKLRGRNILI 556
           S+LT+       SGDK  +K+  + + +A  Y  +S LKL  + +++
Sbjct: 106 SELTMNFLAPLRSGDKFVVKVNISRTSAARIYFDHSILKLPNQEVIL 152


>At3g10740.1 68416.m01293 glycosyl hydrolase family protein 51
           similar to arabinoxylan arabinofuranohydrolase isoenzyme
           AXAH-II from GI:13398414 [Hordeum vulgare]
          Length = 678

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 16/69 (23%), Positives = 37/69 (53%)
 Frame = +3

Query: 33  FRNKIAFFVPVRLINWKHSKVRHSLINFGLHTKQTRSRFSQVPVMGAFSPLDPSSFSRPE 212
           ++N    ++ ++ +N+  +     ++  GL     R   S+  V+ + + +D +SFS+PE
Sbjct: 566 WKNNGKDYIRIKAVNFGANSENMQVLVTGLDPNVMRVSGSKKTVLTSTNVMDENSFSQPE 625

Query: 213 QAVIKHVTL 239
           + V+ H +L
Sbjct: 626 K-VVPHESL 633


>At3g44670.1 68416.m04804 disease resistance protein
           RPP1-Ws[A,C]-like (TIR-NBS-LRR class), putative domain
           signature TIR-NBS-LRR exists, suggestive of a disease
           resistance protein. Closest Col-0 homolog to both RPP1
           Ws-A and RPP1 Ws-C
          Length = 872

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 12/33 (36%), Positives = 21/33 (63%)
 Frame = +2

Query: 413 GSKLTIQLPKRASSGDKLKIKIKYTTSPSATAY 511
           G+++      RA+SGD LKIK+K ++ P+   +
Sbjct: 664 GTQVPACFNHRATSGDSLKIKLKESSLPTTLRF 696


>At1g73960.1 68414.m08565 expressed protein similar to TATA binding
           protein associated factor (GI:2827282) [Homo sapiens];
           similar to Transcription initiation factor TFIID 150 kDa
           subunit (TAFII-150) (TAFII150) (Swiss-Prot:Q24325)
           [Drosophila melanogaster]
          Length = 1390

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 16/45 (35%), Positives = 25/45 (55%)
 Frame = +2

Query: 254 FENKVLNGSATLDVDVLQDIGDVVLDSSELTIESIELDGAQLTYK 388
           F+ + + G   L+V V  DIG V L +  L IES+ +DG    ++
Sbjct: 36  FKKRQIYGYTELEVSV-PDIGIVGLHAENLGIESVLVDGEPTVFE 79


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,597,253
Number of Sequences: 28952
Number of extensions: 301345
Number of successful extensions: 864
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 847
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 864
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1765546400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)