Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30088
         (828 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF043704-1|AAK21475.1|  487|Caenorhabditis elegans Hypothetical ...    66   2e-11
Z71181-4|CAA94897.1|  486|Caenorhabditis elegans Hypothetical pr...    34   0.11 
Z48055-11|CAI58650.1| 1013|Caenorhabditis elegans Hypothetical p...    30   2.3  
Z29443-14|CAI59118.1| 1013|Caenorhabditis elegans Hypothetical p...    30   2.3  
U23168-3|AAU87831.1| 4034|Caenorhabditis elegans Temporarily ass...    29   4.1  
U23168-1|AAU87832.1| 7548|Caenorhabditis elegans Temporarily ass...    29   4.1  
U40414-5|AAA81408.2|  339|Caenorhabditis elegans Hypothetical pr...    28   7.1  
Z93382-9|CAB07615.2|  462|Caenorhabditis elegans Hypothetical pr...    28   9.4  
Z68296-5|CAD59142.2| 1677|Caenorhabditis elegans Hypothetical pr...    28   9.4  
Z68296-4|CAA92591.3| 1838|Caenorhabditis elegans Hypothetical pr...    28   9.4  
U50193-6|AAL32262.1| 1175|Caenorhabditis elegans Cytokinesis def...    28   9.4  
U50193-5|AAL32263.1| 1178|Caenorhabditis elegans Cytokinesis def...    28   9.4  
AF469173-1|AAL79016.1| 1175|Caenorhabditis elegans ubiquitin c-t...    28   9.4  
AF348168-1|AAK37546.1|  462|Caenorhabditis elegans TRF-1 protein.      28   9.4  

>AF043704-1|AAK21475.1|  487|Caenorhabditis elegans Hypothetical
           protein W01B11.3 protein.
          Length = 487

 Score = 66.5 bits (155), Expect = 2e-11
 Identities = 32/78 (41%), Positives = 49/78 (62%)
 Frame = +2

Query: 89  MLVLFETPAGYAIFKLLDESKLSEIDNLYQEFNTPEGASTVVKLKNFVKFEDTTEVWQPL 268
           MLVLFE  AGYA+FKL +E KL  +DN+++EF+T E A   ++L +F KF+ T    +  
Sbjct: 1   MLVLFEVAAGYAVFKLSNEKKLKNVDNIWEEFSTAEKAQENLQLVSFKKFKTTAGAVEAT 60

Query: 269 LQLLRARYLSP*RKLLRS 322
            ++   +     +KLL+S
Sbjct: 61  SEITEGKLSKTLKKLLKS 78



 Score = 62.5 bits (145), Expect = 4e-10
 Identities = 22/36 (61%), Positives = 29/36 (80%)
 Frame = +2

Query: 614 LNNYIMRCREWYGWHFPELGKIITDNTLFVKVVNSL 721
           LNNY+MR REWYGWHFPELGK I D+  + K++ ++
Sbjct: 174 LNNYVMRVREWYGWHFPELGKTIQDHQAYAKIIKAI 209



 Score = 54.4 bits (125), Expect = 9e-08
 Identities = 43/108 (39%), Positives = 52/108 (48%), Gaps = 1/108 (0%)
 Frame = +3

Query: 495 DSYGLGLAHSLSRYKLKFSPDKIDTMIVQAQCXXXXXXXXXXXXS*GAVNGMVGISQSLG 674
           ++  L +AHSL+RYK+KF+P+KIDTMIVQA                            LG
Sbjct: 134 NAMNLAVAHSLARYKVKFNPEKIDTMIVQAVSLLDDLDKELNNYVMRVREWYGWHFPELG 193

Query: 675 KSSLITLCL*KW*THWHTRL-CIQD*FI*HLPEDLEEKVKEAAEISMG 815
           K+        K       R  CI       LPE+LEEKVKE AEISMG
Sbjct: 194 KTIQDHQAYAKIIKAIGMRQNCINTDLSSILPEELEEKVKEDAEISMG 241



 Score = 53.6 bits (123), Expect = 2e-07
 Identities = 25/54 (46%), Positives = 40/54 (74%)
 Frame = +1

Query: 343 DQLLVGDSKLGSAIREKFDLQCVSNTNVQELLRCIRSQMDSLLAGLPKKEMTAM 504
           ++L VGD+KLG+ I+EK  L CV ++++ EL+R +R+ ++ LLA   K+EM AM
Sbjct: 84  EKLAVGDAKLGNLIKEKLSLNCVHDSSINELMRGVRAHIEDLLAE-HKEEMNAM 136


>Z71181-4|CAA94897.1|  486|Caenorhabditis elegans Hypothetical
           protein K07C5.4 protein.
          Length = 486

 Score = 34.3 bits (75), Expect = 0.11
 Identities = 12/25 (48%), Positives = 18/25 (72%)
 Frame = +2

Query: 614 LNNYIMRCREWYGWHFPELGKIITD 688
           +N + MR REWY +H+PEL ++  D
Sbjct: 185 INLFGMRIREWYSYHYPELFRLAPD 209



 Score = 31.5 bits (68), Expect = 0.76
 Identities = 12/26 (46%), Positives = 18/26 (69%)
 Frame = +3

Query: 507 LGLAHSLSRYKLKFSPDKIDTMIVQA 584
           L L HS SR K+KF   ++D M++Q+
Sbjct: 149 LSLGHSYSRSKVKFDVHRVDNMVIQS 174


>Z48055-11|CAI58650.1| 1013|Caenorhabditis elegans Hypothetical
           protein T07C4.10 protein.
          Length = 1013

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = +1

Query: 430 ELLRCIRSQMDSLLAGLPKKEMTAMAWAWLTL 525
           E  R I   + S+L+G   +EM    W WLTL
Sbjct: 749 EAFRKISQLLKSILSGANSEEMLERIWTWLTL 780


>Z29443-14|CAI59118.1| 1013|Caenorhabditis elegans Hypothetical
           protein T07C4.10 protein.
          Length = 1013

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = +1

Query: 430 ELLRCIRSQMDSLLAGLPKKEMTAMAWAWLTL 525
           E  R I   + S+L+G   +EM    W WLTL
Sbjct: 749 EAFRKISQLLKSILSGANSEEMLERIWTWLTL 780


>U23168-3|AAU87831.1| 4034|Caenorhabditis elegans Temporarily assigned
            gene nameprotein 308, isoform b protein.
          Length = 4034

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 16/49 (32%), Positives = 25/49 (51%)
 Frame = +2

Query: 95   VLFETPAGYAIFKLLDESKLSEIDNLYQEFNTPEGASTVVKLKNFVKFE 241
            VL  TPA     + L E   SE+   +   ++ E AS V++ K  VK++
Sbjct: 2883 VLLGTPASQVFTRNLQEPIQSEVQGFWSTNSSQEKASLVIRQKLNVKYD 2931


>U23168-1|AAU87832.1| 7548|Caenorhabditis elegans Temporarily assigned
            gene nameprotein 308, isoform c protein.
          Length = 7548

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 16/49 (32%), Positives = 25/49 (51%)
 Frame = +2

Query: 95   VLFETPAGYAIFKLLDESKLSEIDNLYQEFNTPEGASTVVKLKNFVKFE 241
            VL  TPA     + L E   SE+   +   ++ E AS V++ K  VK++
Sbjct: 2883 VLLGTPASQVFTRNLQEPIQSEVQGFWSTNSSQEKASLVIRQKLNVKYD 2931


>U40414-5|AAA81408.2|  339|Caenorhabditis elegans Hypothetical
           protein F53B3.5 protein.
          Length = 339

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 13/26 (50%), Positives = 15/26 (57%)
 Frame = -3

Query: 403 VSQIFL*WHYPA*SHRQGVDPEPLYK 326
           +S   L WHY A S R  +D EP YK
Sbjct: 185 MSVAMLLWHYVAYSERYTLDVEPYYK 210


>Z93382-9|CAB07615.2|  462|Caenorhabditis elegans Hypothetical
           protein F45G2.6 protein.
          Length = 462

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 19/59 (32%), Positives = 28/59 (47%)
 Frame = -1

Query: 690 LSVMIFPSSGKCQPYHSRHLMM*LFNPCQDHQANTELEQS*CLFCQERTLICTSRESEP 514
           LS   F SS KC+    +       N  + H+A  EL ++ C FC  +T+  + RE  P
Sbjct: 100 LSECTFKSSLKCEKCGRQFAK----NDLEKHRAKCELNRAVCSFC-NKTIRDSDRERHP 153


>Z68296-5|CAD59142.2| 1677|Caenorhabditis elegans Hypothetical
           protein C46C2.1b protein.
          Length = 1677

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 27/105 (25%), Positives = 50/105 (47%), Gaps = 5/105 (4%)
 Frame = +2

Query: 104 ETPAGYAI-FKLLDESKLSEIDNLYQEFNTPEGASTVVKLKNFVKFEDTTEVWQPLLQLL 280
           +T  G A+ +  L ESKL++ +   Q F         ++  N V+F D    W+      
Sbjct: 351 DTETGVAVAWCELQESKLNKTER--QRFREEAEMLKDLQHPNIVRFYD---YWESADLCG 405

Query: 281 RARYLSP*RKLLRS----MFVKRFRINSLSVTLSWVVPLEKNLTY 403
           + +Y+    +L+ S    M++KRF+  ++ V  SW   + K L++
Sbjct: 406 KRKYIVLVTELMTSGTLKMYLKRFKRINIKVLKSWCRQILKGLSF 450


>Z68296-4|CAA92591.3| 1838|Caenorhabditis elegans Hypothetical
           protein C46C2.1a protein.
          Length = 1838

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 27/105 (25%), Positives = 50/105 (47%), Gaps = 5/105 (4%)
 Frame = +2

Query: 104 ETPAGYAI-FKLLDESKLSEIDNLYQEFNTPEGASTVVKLKNFVKFEDTTEVWQPLLQLL 280
           +T  G A+ +  L ESKL++ +   Q F         ++  N V+F D    W+      
Sbjct: 351 DTETGVAVAWCELQESKLNKTER--QRFREEAEMLKDLQHPNIVRFYD---YWESADLCG 405

Query: 281 RARYLSP*RKLLRS----MFVKRFRINSLSVTLSWVVPLEKNLTY 403
           + +Y+    +L+ S    M++KRF+  ++ V  SW   + K L++
Sbjct: 406 KRKYIVLVTELMTSGTLKMYLKRFKRINIKVLKSWCRQILKGLSF 450


>U50193-6|AAL32262.1| 1175|Caenorhabditis elegans Cytokinesis defect
           protein 3, isoforma protein.
          Length = 1175

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 14/32 (43%), Positives = 19/32 (59%)
 Frame = +2

Query: 131 KLLDESKLSEIDNLYQEFNTPEGASTVVKLKN 226
           KLL + +LS   N+Y++ N PE   TV K  N
Sbjct: 229 KLLSDEELS---NMYKDLNVPEEHQTVTKSSN 257


>U50193-5|AAL32263.1| 1178|Caenorhabditis elegans Cytokinesis defect
           protein 3, isoformb protein.
          Length = 1178

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 14/32 (43%), Positives = 19/32 (59%)
 Frame = +2

Query: 131 KLLDESKLSEIDNLYQEFNTPEGASTVVKLKN 226
           KLL + +LS   N+Y++ N PE   TV K  N
Sbjct: 229 KLLSDEELS---NMYKDLNVPEEHQTVTKSSN 257


>AF469173-1|AAL79016.1| 1175|Caenorhabditis elegans ubiquitin
           c-terminal hydrolase protein.
          Length = 1175

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 14/32 (43%), Positives = 19/32 (59%)
 Frame = +2

Query: 131 KLLDESKLSEIDNLYQEFNTPEGASTVVKLKN 226
           KLL + +LS   N+Y++ N PE   TV K  N
Sbjct: 229 KLLSDEELS---NMYKDLNVPEEHQTVTKSSN 257


>AF348168-1|AAK37546.1|  462|Caenorhabditis elegans TRF-1 protein.
          Length = 462

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 19/59 (32%), Positives = 28/59 (47%)
 Frame = -1

Query: 690 LSVMIFPSSGKCQPYHSRHLMM*LFNPCQDHQANTELEQS*CLFCQERTLICTSRESEP 514
           LS   F SS KC+    +       N  + H+A  EL ++ C FC  +T+  + RE  P
Sbjct: 100 LSECTFKSSLKCEKCGRQFAK----NDLEKHRAKCELNRAVCSFC-NKTIRDSDRERHP 153


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,927,337
Number of Sequences: 27780
Number of extensions: 358382
Number of successful extensions: 833
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 801
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 833
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2050970610
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)