Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30088
         (828 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    23   2.6  
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      23   2.6  
DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholi...    23   3.4  
DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholi...    23   3.4  
AY569721-1|AAS86674.1|  400|Apis mellifera complementary sex det...    22   8.0  

>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 23.4 bits (48), Expect = 2.6
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = -2

Query: 248 LCPQTLQSSLT*PLWKPLLEC 186
           LCP TL+  +  P   P+ EC
Sbjct: 454 LCPYTLKHKIRVPPGTPIYEC 474


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 23.4 bits (48), Expect = 2.6
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = -2

Query: 620 CLILVKIIKQTLSLNNHSVYFVRRE 546
           C +  K+ +   SLNNH   + RR+
Sbjct: 404 CALCHKVFRTLNSLNNHKSIYHRRQ 428


>DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 23.0 bits (47), Expect = 3.4
 Identities = 6/18 (33%), Positives = 13/18 (72%)
 Frame = -2

Query: 107 SRIEPTYWKHTYTTIQQI 54
           ++++PTY+ HTY   + +
Sbjct: 33  TKLQPTYFHHTYIIYESL 50


>DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 23.0 bits (47), Expect = 3.4
 Identities = 6/18 (33%), Positives = 13/18 (72%)
 Frame = -2

Query: 107 SRIEPTYWKHTYTTIQQI 54
           ++++PTY+ HTY   + +
Sbjct: 33  TKLQPTYFHHTYIIYESL 50


>AY569721-1|AAS86674.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 21.8 bits (44), Expect = 8.0
 Identities = 16/56 (28%), Positives = 25/56 (44%)
 Frame = -2

Query: 554 RREL*FVPRERVSQAQAIAVISFLGSPARRLSICERIHRSSSWTLVFDTHCKSNFS 387
           RRE   + +ER  + Q +     L    RR+   E++    S +   D+  KSN S
Sbjct: 39  RREAWLIQQEREREHQRLMKKMILEYELRRIREIEKLGSERSKSRSPDSRDKSNTS 94


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 216,382
Number of Sequences: 438
Number of extensions: 4392
Number of successful extensions: 23
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26460186
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)