Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30088
         (828 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g27120.1 68418.m03237 SAR DNA-binding protein, putative stron...    98   7e-21
At3g05060.1 68416.m00549 SAR DNA-binding protein, putative stron...    72   4e-13
At3g12860.1 68416.m01603 nucleolar protein Nop56, putative simil...    54   1e-07
At5g27140.1 68418.m03239 SAR DNA-binding protein, putative stron...    54   2e-07
At1g56110.1 68414.m06443 nucleolar protein Nop56, putative simil...    53   3e-07
At2g02955.1 68415.m00243 expressed protein ; expression supporte...    32   0.40 
At5g14910.1 68418.m01749 heavy-metal-associated domain-containin...    28   6.6  
At1g16400.1 68414.m01961 cytochrome P450 family protein similar ...    28   8.7  

>At5g27120.1 68418.m03237 SAR DNA-binding protein, putative strong
           similarity to SAR DNA-binding protein-1 [Pisum sativum]
           GI:3132696; contains Pfam profile PF01798: Putative
           snoRNA binding domain
          Length = 533

 Score = 97.9 bits (233), Expect = 7e-21
 Identities = 74/219 (33%), Positives = 109/219 (49%), Gaps = 6/219 (2%)
 Frame = +2

Query: 89  MLVLFETPAGYAIFKLLDESKLSEIDNLYQEFNTPEGASTVVKLKNFVKFEDTTEVWQPL 268
           ML+LFETP G+AIFK+L+E KLS +++L  EF+T + A  +VKL  F KF++T E  + +
Sbjct: 1   MLILFETPGGFAIFKVLNEGKLSNVEDLGNEFSTAKLARKMVKLVAFDKFDNTAEALEAV 60

Query: 269 LQLLRARYLSP*RKLLRSMFVKRFRINSLSVTLSWVVPLEKNLTYNVYQILMSRNCSGVF 448
            +LL        RK L        + N +  TL+       N+     +I+   N + + 
Sbjct: 61  AKLLEGTPSKGLRKFL--------KANCVGETLAVADSKLGNIIKEKLKIVCVHNNAVME 112

Query: 449 AHRWTVS*L-DFLKKK*QLWLGPGSLSLE-----VQIKVLS*QNRHYDCSSSVFA**S*Q 610
             R   S L + +       LGP SL L       ++K  S +       +        +
Sbjct: 113 LLRGIRSQLTELISGLGDQDLGPMSLGLSHSLARYKLKFSSDKVDTMIIQAIGLLDDLDK 172

Query: 611 GLNNYIMRCREWYGWHFPELGKIITDNTLFVKVVNSLAH 727
            LN Y MR REW+GWHFPEL KI+ DN L+ K V  + +
Sbjct: 173 ELNTYAMRVREWFGWHFPELAKIVQDNILYAKAVKLMGN 211



 Score = 54.8 bits (126), Expect = 7e-08
 Identities = 27/57 (47%), Positives = 38/57 (66%)
 Frame = +1

Query: 337 VQDQLLVGDSKLGSAIREKFDLQCVSNTNVQELLRCIRSQMDSLLAGLPKKEMTAMA 507
           V + L V DSKLG+ I+EK  + CV N  V ELLR IRSQ+  L++GL  +++  M+
Sbjct: 81  VGETLAVADSKLGNIIKEKLKIVCVHNNAVMELLRGIRSQLTELISGLGDQDLGPMS 137



 Score = 49.6 bits (113), Expect = 2e-06
 Identities = 21/26 (80%), Positives = 25/26 (96%)
 Frame = +3

Query: 507 LGLAHSLSRYKLKFSPDKIDTMIVQA 584
           LGL+HSL+RYKLKFS DK+DTMI+QA
Sbjct: 138 LGLSHSLARYKLKFSSDKVDTMIIQA 163


>At3g05060.1 68416.m00549 SAR DNA-binding protein, putative strong
           similarity to SAR DNA-binding protein-1 [Pisum sativum]
           GI:3132696; contains Pfam profile PF01798: Putative
           snoRNA binding domain
          Length = 533

 Score = 72.1 bits (169), Expect = 4e-13
 Identities = 33/78 (42%), Positives = 55/78 (70%)
 Frame = +2

Query: 89  MLVLFETPAGYAIFKLLDESKLSEIDNLYQEFNTPEGASTVVKLKNFVKFEDTTEVWQPL 268
           +LVL+ET AG+A+FK+ DE K++ +++L +EF+TP+ A  +VKLK F KF++T+E  + +
Sbjct: 2   VLVLYETAAGFALFKVKDEGKMANVEDLCKEFDTPDSARKMVKLKAFEKFDNTSEALEAV 61

Query: 269 LQLLRARYLSP*RKLLRS 322
            +LL        RK L++
Sbjct: 62  AKLLEGAPSKGLRKFLKA 79



 Score = 60.9 bits (141), Expect = 1e-09
 Identities = 25/45 (55%), Positives = 30/45 (66%)
 Frame = +2

Query: 614 LNNYIMRCREWYGWHFPELGKIITDNTLFVKVVNSLAHETMHPRL 748
           LN Y MR REWYGWHFPEL KII+DN L+ K V  + +     +L
Sbjct: 175 LNTYAMRVREWYGWHFPELAKIISDNILYAKSVKLMGNRVNAAKL 219



 Score = 54.4 bits (125), Expect = 9e-08
 Identities = 24/55 (43%), Positives = 36/55 (65%)
 Frame = +1

Query: 343 DQLLVGDSKLGSAIREKFDLQCVSNTNVQELLRCIRSQMDSLLAGLPKKEMTAMA 507
           + L V DSKLG+ I+EK  + C+ N  V ELLR +RSQ   L++GL  +++  M+
Sbjct: 84  ETLAVADSKLGNVIKEKLKIDCIHNNAVMELLRGVRSQFTELISGLGDQDLAPMS 138



 Score = 49.6 bits (113), Expect = 2e-06
 Identities = 21/26 (80%), Positives = 25/26 (96%)
 Frame = +3

Query: 507 LGLAHSLSRYKLKFSPDKIDTMIVQA 584
           LGL+HSL+RYKLKFS DK+DTMI+QA
Sbjct: 139 LGLSHSLARYKLKFSSDKVDTMIIQA 164


>At3g12860.1 68416.m01603 nucleolar protein Nop56, putative similar
           to XNop56 protein [Xenopus laevis] GI:14799394; contains
           Pfam profile PF01798: Putative snoRNA binding domain
          Length = 499

 Score = 54.0 bits (124), Expect = 1e-07
 Identities = 20/32 (62%), Positives = 25/32 (78%)
 Frame = +2

Query: 614 LNNYIMRCREWYGWHFPELGKIITDNTLFVKV 709
           +N++ MR REWY WHFPEL KI+ DN L+ KV
Sbjct: 185 INSFAMRVREWYSWHFPELVKIVNDNYLYAKV 216



 Score = 37.9 bits (84), Expect = 0.008
 Identities = 15/26 (57%), Positives = 22/26 (84%)
 Frame = +3

Query: 507 LGLAHSLSRYKLKFSPDKIDTMIVQA 584
           LGLAHS SR K+KF+ +++D M++QA
Sbjct: 149 LGLAHSYSRAKVKFNVNRVDNMVIQA 174



 Score = 33.9 bits (74), Expect = 0.13
 Identities = 17/42 (40%), Positives = 22/42 (52%)
 Frame = +1

Query: 355 VGDSKLGSAIREKFDLQCVSNTNVQELLRCIRSQMDSLLAGL 480
           V + K+GS I E   + C SN  V ELLR +R   D  +  L
Sbjct: 98  VSEPKIGSCIFEATKIPCQSNEFVHELLRGVRQHFDRFIKDL 139


>At5g27140.1 68418.m03239 SAR DNA-binding protein, putative strong
           similarity to SAR DNA-binding protein-1 [Pisum sativum]
           GI:3132696; contains Pfam profile PF01798: Putative
           snoRNA binding domain
          Length = 445

 Score = 53.6 bits (123), Expect = 2e-07
 Identities = 25/53 (47%), Positives = 34/53 (64%)
 Frame = +1

Query: 349 LLVGDSKLGSAIREKFDLQCVSNTNVQELLRCIRSQMDSLLAGLPKKEMTAMA 507
           L V D KLG  I EK D++CV N  V ELLR +RSQ+  LL+GL   ++  ++
Sbjct: 57  LAVADPKLGDIITEKLDIECVHNDAVMELLRGVRSQLTELLSGLDDNDLAPVS 109



 Score = 49.2 bits (112), Expect = 3e-06
 Identities = 25/49 (51%), Positives = 34/49 (69%)
 Frame = +2

Query: 89  MLVLFETPAGYAIFKLLDESKLSEIDNLYQEFNTPEGASTVVKLKNFVK 235
           MLVLFET  G+A+FK+LDE KLS +++L  EF + E A   + L  F+K
Sbjct: 1   MLVLFETSGGFALFKVLDEGKLSNVEDLGTEFYSAESARR-MGLHKFLK 48



 Score = 41.1 bits (92), Expect = 9e-04
 Identities = 18/38 (47%), Positives = 22/38 (57%)
 Frame = +2

Query: 614 LNNYIMRCREWYGWHFPELGKIITDNTLFVKVVNSLAH 727
           LN Y     E YG HFPEL  I+ DN L+ KVV  + +
Sbjct: 144 LNTYTTSVCELYGLHFPELANIVQDNILYAKVVKLMGN 181



 Score = 27.9 bits (59), Expect = 8.7
 Identities = 14/24 (58%), Positives = 18/24 (75%)
 Frame = +3

Query: 507 LGLAHSLSRYKLKFSPDKIDTMIV 578
           L L+H L+RYKLK + DK  TMI+
Sbjct: 110 LELSHILARYKLKITSDK--TMII 131


>At1g56110.1 68414.m06443 nucleolar protein Nop56, putative similar
           to XNop56 protein [Xenopus laevis] GI:14799394; contains
           Pfam profile PF01798: Putative snoRNA binding domain
          Length = 522

 Score = 52.8 bits (121), Expect = 3e-07
 Identities = 19/32 (59%), Positives = 25/32 (78%)
 Frame = +2

Query: 614 LNNYIMRCREWYGWHFPELGKIITDNTLFVKV 709
           +N++ MR REWY WHFPEL KI+ DN L+ +V
Sbjct: 185 INSFAMRVREWYSWHFPELVKIVNDNYLYARV 216



 Score = 37.9 bits (84), Expect = 0.008
 Identities = 15/26 (57%), Positives = 22/26 (84%)
 Frame = +3

Query: 507 LGLAHSLSRYKLKFSPDKIDTMIVQA 584
           LGLAHS SR K+KF+ +++D M++QA
Sbjct: 149 LGLAHSYSRAKVKFNVNRVDNMVIQA 174



 Score = 31.9 bits (69), Expect = 0.53
 Identities = 17/42 (40%), Positives = 22/42 (52%)
 Frame = +1

Query: 355 VGDSKLGSAIREKFDLQCVSNTNVQELLRCIRSQMDSLLAGL 480
           + + KLGS I E   + C SN  V ELLR +R   D  +  L
Sbjct: 98  LAEPKLGSHIFEATKIPCQSNEFVLELLRGVRQHFDRFIKDL 139


>At2g02955.1 68415.m00243 expressed protein ; expression supported
           by MPSS
          Length = 666

 Score = 32.3 bits (70), Expect = 0.40
 Identities = 14/43 (32%), Positives = 27/43 (62%)
 Frame = +3

Query: 453 TDGQSPSWTS*KRNDSYGLGLAHSLSRYKLKFSPDKIDTMIVQ 581
           +DG +P  +S +RN+S  +GL  S S ++   SP+K+  + ++
Sbjct: 515 SDGNNPCSSSSRRNESVSIGLDLSSSEHRESSSPEKLKEIAIK 557


>At5g14910.1 68418.m01749 heavy-metal-associated domain-containing
           protein  Pfam profile PF00403: Heavy-metal-associated
           domain
          Length = 178

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 15/40 (37%), Positives = 22/40 (55%)
 Frame = +2

Query: 320 SMFVKRFRINSLSVTLSWVVPLEKNLTYNVYQILMSRNCS 439
           S F    R  S +++ + ++PL KNL +    I  SRNCS
Sbjct: 8   STFHSFCRTKSPNLSSTHLLPLSKNLNFRTRAIGNSRNCS 47


>At1g16400.1 68414.m01961 cytochrome P450 family protein similar to
           gb|AF069494 cytochrome P450 from Sinapis alba and is a
           member of the PF|00067 Cytochrome P450 family; identical
           to cytochrome P450 CYP79F2 (CYP79F2) GI:10946207
          Length = 537

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = +2

Query: 617 NNYIMRCREWYGWHFPELGKIITDNTLFVKVVNSL 721
           +NY       YG HF ++ K+IT   + VK +N L
Sbjct: 125 DNYKTMGTSSYGEHFMKMKKVITTEIMSVKTLNML 159


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,802,570
Number of Sequences: 28952
Number of extensions: 328815
Number of successful extensions: 701
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 671
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 701
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1902108000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)