Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30087X
         (311 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC365.14c |||UDP-glucose 4-epimerase |Schizosaccharomyces pomb...    26   1.5  
SPCC1020.13c ||SPCC14G10.05|phospholipase |Schizosaccharomyces p...    25   2.6  
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces...    25   3.5  
SPBC32H8.13c |mok12||alpha-1,3-glucan synthase Mok12|Schizosacch...    23   8.1  

>SPBC365.14c |||UDP-glucose 4-epimerase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 355

 Score = 25.8 bits (54), Expect = 1.5
 Identities = 12/43 (27%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
 Frame = -2

Query: 259 VGVRGDAFPPITAPSTPLLSHLHACSL--VHIKYISFSS*NFI 137
           + V GD +P  T+  TP+  ++H C L   H+  + +   +F+
Sbjct: 224 LNVFGDDYP--TSDGTPIRDYIHVCDLAEAHVAALDYLRQHFV 264


>SPCC1020.13c ||SPCC14G10.05|phospholipase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 669

 Score = 25.0 bits (52), Expect = 2.6
 Identities = 9/29 (31%), Positives = 15/29 (51%)
 Frame = -3

Query: 162 FLFHHKILYITKVVSQTNVRFY*WPDLTP 76
           ++ HHK   I  V+ + N  ++ W D  P
Sbjct: 357 YMSHHKESIIKSVIREANRVYHLWKDCNP 385


>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 3699

 Score = 24.6 bits (51), Expect = 3.5
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -2

Query: 253 VRGDAFPPITAPSTPLLSHLHACS 182
           V  +AFPP +AP+TP    + A S
Sbjct: 192 VVSEAFPPRSAPNTPSSHPMSAAS 215


>SPBC32H8.13c |mok12||alpha-1,3-glucan synthase
            Mok12|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2352

 Score = 23.4 bits (48), Expect = 8.1
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = +2

Query: 245  SPHPYPVKISDYISIVIY 298
            S  PYP+K+ D  S + Y
Sbjct: 1268 SKEPYPLKMDDLASAIFY 1285


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,190,499
Number of Sequences: 5004
Number of extensions: 20397
Number of successful extensions: 48
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 48
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 48
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 81889040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)