Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30087X
         (311 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_43930| Best HMM Match : ANF_receptor (HMM E-Value=0)                27   4.1  
SB_22293| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   7.2  
SB_22942| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   9.5  

>SB_43930| Best HMM Match : ANF_receptor (HMM E-Value=0)
          Length = 915

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 12/22 (54%), Positives = 16/22 (72%), Gaps = 2/22 (9%)
 Frame = +3

Query: 189 ACRCDNKGVE--GAVIGGNASP 248
           +C C+ +G+   GAVIGG ASP
Sbjct: 127 SCFCEGRGMPLVGAVIGGAASP 148


>SB_22293| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1239

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 20/73 (27%), Positives = 36/73 (49%), Gaps = 1/73 (1%)
 Frame = -2

Query: 232  PITAPSTPLLSHLHACSLVHIKYISFSS*NFIHYKSSITNKCTILLMARP-DAARTHYVP 56
            P+TA  +P+L   +   L HI ++ +     I Y++S T  C  +++ R   A R+  + 
Sbjct: 836  PLTAHRSPVLGSYYGDPLPHIIHLYWGRITEILYRTSFT--CIGVVLRRSFTAHRSPVLG 893

Query: 55   AYAGRIQKKNVHI 17
            +Y G      VH+
Sbjct: 894  SYYGGPLPHIVHL 906


>SB_22942| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1092

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 12/30 (40%), Positives = 15/30 (50%)
 Frame = -2

Query: 256 GVRGDAFPPITAPSTPLLSHLHACSLVHIK 167
           GV  DAFPP +    P L HL   +   +K
Sbjct: 37  GVVPDAFPPPSEQGVPSLKHLAENAAASVK 66


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,851,438
Number of Sequences: 59808
Number of extensions: 149039
Number of successful extensions: 288
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 269
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 288
length of database: 16,821,457
effective HSP length: 72
effective length of database: 12,515,281
effective search space used: 387973711
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)