Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30087X
         (311 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g23220.1 68415.m02773 cytochrome P450, putative                     29   0.87 
At3g06730.1 68416.m00798 thioredoxin family protein contains Pfa...    28   1.5  
At5g08470.1 68418.m00999 peroxisome biogenesis protein (PEX1) id...    27   2.6  
At1g04210.1 68414.m00411 leucine-rich repeat family protein / pr...    26   4.6  
At3g28740.1 68416.m03588 cytochrome P450 family protein contains...    26   6.1  
At3g10410.1 68416.m01248 serine carboxypeptidase III, putative s...    25   8.1  
At2g42890.2 68415.m05312 RNA recognition motif (RRM)-containing ...    25   8.1  
At2g42890.1 68415.m05311 RNA recognition motif (RRM)-containing ...    25   8.1  
At2g28355.1 68415.m03446 expressed protein contains similarity t...    25   8.1  

>At2g23220.1 68415.m02773 cytochrome P450, putative 
          Length = 515

 Score = 28.7 bits (61), Expect = 0.87
 Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
 Frame = -2

Query: 268 LYGVGVRGDAFPPITAPSTPLLSHLHACSL-VHIKYISFS 152
           L+G  +     PP  A   PL+ HLH   L +H  ++SFS
Sbjct: 36  LFGKRLSKFNLPPSPARPLPLIGHLHLLKLPLHRTFLSFS 75


>At3g06730.1 68416.m00798 thioredoxin family protein contains Pfam
           profile: PF00085 Thioredoxin
          Length = 183

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = -2

Query: 253 VRGDAFPPITAPSTPLLSHLHACSLVHIK 167
           V+   FP +  P +P+LS LHA S + I+
Sbjct: 4   VQSRTFPHLNTPLSPILSSLHAPSSLFIR 32


>At5g08470.1 68418.m00999 peroxisome biogenesis protein (PEX1)
            identical to peroxisome biogenesis protein PEX1
            [Arabidopsis thaliana] gi|12006272|gb|AAG44817; contains
            Pfam profile PF00004: ATPase, AAA family; identical to
            cDNA peroxisome biogenesis protein PEX1 (PEX1) mRNA,
            partial cds GI:12006271
          Length = 1130

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 13/44 (29%), Positives = 20/44 (45%)
 Frame = -2

Query: 139  IHYKSSITNKCTILLMARPDAARTHYVPAYAGRIQKKNVHISGP 8
            I  KS +  +  +LL   P   +TH V A A     + + + GP
Sbjct: 869  IFAKSPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGP 912


>At1g04210.1 68414.m00411 leucine-rich repeat family protein / protein
            kinase family protein contains Pfam domains PF00560:
            Leucine Rich Repeat and PF00069: Protein kinase domain
          Length = 1112

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = -2

Query: 217  STPLLSHLHACSLVHI 170
            + PL SHLH C + H+
Sbjct: 956  AVPLRSHLHGCCIAHV 971


>At3g28740.1 68416.m03588 cytochrome P450 family protein contains
           Pfam profile: PF00067 cytochrome P450
          Length = 509

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 13/40 (32%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
 Frame = -2

Query: 268 LYGVGVRGDAFPPITAPSTPLLSHLHACSL-VHIKYISFS 152
           L+G   R    PP  +   P++ HLH   L +H +++S S
Sbjct: 29  LFGPRPRKLNLPPSPSRPFPIIGHLHLLKLPLHRRFLSLS 68


>At3g10410.1 68416.m01248 serine carboxypeptidase III, putative
           similar to serine carboxypeptidase III from Oryza sativa
           SP|P37891, Matricaria chamomilla GI:6960455, Hordeum
           vulgare SP|P21529, Triticum aestivum SP|P11515; contains
           Pfam profile PF0450 serine carboxypeptidase
          Length = 516

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = -2

Query: 67  HYVPAYAGRIQKKN 26
           HY+PA+A R+ K N
Sbjct: 233 HYIPAFASRVHKGN 246


>At2g42890.2 68415.m05312 RNA recognition motif (RRM)-containing
           protein
          Length = 830

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = -2

Query: 130 KSSITNKCTILLMARPDAARTHYVPAYAGRIQKKNV 23
           +S I  KC  L ++RP  AR   VP+ +  +++  V
Sbjct: 328 RSEIGGKCIKLELSRPGGARRLSVPSQSQDLERTEV 363


>At2g42890.1 68415.m05311 RNA recognition motif (RRM)-containing
           protein
          Length = 843

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = -2

Query: 130 KSSITNKCTILLMARPDAARTHYVPAYAGRIQKKNV 23
           +S I  KC  L ++RP  AR   VP+ +  +++  V
Sbjct: 341 RSEIGGKCIKLELSRPGGARRLSVPSQSQDLERTEV 376


>At2g28355.1 68415.m03446 expressed protein contains similarity to
           anther-specific protein GI:1448935 from [Brassica rapa]
          Length = 78

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = -1

Query: 263 RGRGAGRCVPADHCALY 213
           RG+GAG C P+  C  Y
Sbjct: 58  RGKGAGYCSPSKKCYCY 74


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,103,736
Number of Sequences: 28952
Number of extensions: 102200
Number of successful extensions: 239
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 239
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 239
length of database: 12,070,560
effective HSP length: 70
effective length of database: 10,043,920
effective search space used: 331449360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)