Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30086
         (513 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0963 - 12769715-12769859,12770639-12770889                       50   1e-06
07_03_1662 + 28447419-28447666,28448429-28448573                       45   3e-05

>03_02_0963 - 12769715-12769859,12770639-12770889
          Length = 131

 Score = 50.0 bits (114), Expect = 1e-06
 Identities = 27/57 (47%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
 Frame = +3

Query: 261 VVVARDKTKVAITADIPFSXXXXXXXXXXXXXXXXXXDWLRVVASAHD--AYELRYF 425
           V V+RDKTKV +T+D PFS                  DWLRV+AS  D   YELRYF
Sbjct: 64  VTVSRDKTKVTVTSDGPFSKRYLKYLTKKYLKKHNVRDWLRVIASNKDRNVYELRYF 120



 Score = 42.7 bits (96), Expect = 2e-04
 Identities = 17/40 (42%), Positives = 27/40 (67%), Gaps = 1/40 (2%)
 Frame = +1

Query: 136 NLKFTIDCTHPAEDSILDVGNFEKYLKEHVKVE-GKTNNL 252
           ++ F IDC  P +D I+++ + EK+L+E +KV  GK  NL
Sbjct: 21  SVTFVIDCAKPVDDKIMEIASLEKFLQERIKVAGGKAGNL 60


>07_03_1662 + 28447419-28447666,28448429-28448573
          Length = 130

 Score = 45.2 bits (102), Expect = 3e-05
 Identities = 25/57 (43%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
 Frame = +3

Query: 261 VVVARDKTKVAITADIPFSXXXXXXXXXXXXXXXXXXDWLRVVASAHD--AYELRYF 425
           V V RDKTKV +T+D  FS                  DWLRV+A+  D   YELRYF
Sbjct: 63  VTVTRDKTKVTVTSDGAFSKRYLKYLTKKYLKKHNVRDWLRVIAANKDRNVYELRYF 119



 Score = 44.8 bits (101), Expect = 4e-05
 Identities = 18/40 (45%), Positives = 28/40 (70%), Gaps = 1/40 (2%)
 Frame = +1

Query: 136 NLKFTIDCTHPAEDSILDVGNFEKYLKEHVKVE-GKTNNL 252
           ++ F IDC+ P ED I+++ + EK+L+E +KV  GK  NL
Sbjct: 20  SVSFVIDCSKPVEDKIMEIASLEKFLQERIKVAGGKAGNL 59


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,194,663
Number of Sequences: 37544
Number of extensions: 190885
Number of successful extensions: 446
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 434
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 444
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1106928780
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)