Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30086
         (513 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_33983| Best HMM Match : No HMM Matches (HMM E-Value=.)              36   0.020
SB_2161| Best HMM Match : Ribosomal_L22e (HMM E-Value=1.1e-05)         36   0.020
SB_2203| Best HMM Match : No HMM Matches (HMM E-Value=.)               31   0.74 
SB_47669| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.7  
SB_19339| Best HMM Match : Transposase_21 (HMM E-Value=5.6e-05)        29   3.0  

>SB_33983| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 50

 Score = 35.9 bits (79), Expect = 0.020
 Identities = 14/18 (77%), Positives = 16/18 (88%)
 Frame = +3

Query: 372 DWLRVVASAHDAYELRYF 425
           DWLRVVA+ H +YELRYF
Sbjct: 18  DWLRVVAADHTSYELRYF 35


>SB_2161| Best HMM Match : Ribosomal_L22e (HMM E-Value=1.1e-05)
          Length = 50

 Score = 35.9 bits (79), Expect = 0.020
 Identities = 14/18 (77%), Positives = 16/18 (88%)
 Frame = +3

Query: 372 DWLRVVASAHDAYELRYF 425
           DWLRVVA+ H +YELRYF
Sbjct: 18  DWLRVVAADHTSYELRYF 35


>SB_2203| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 202

 Score = 30.7 bits (66), Expect = 0.74
 Identities = 23/61 (37%), Positives = 32/61 (52%), Gaps = 3/61 (4%)
 Frame = +1

Query: 151 IDCTHPAEDSILDVGNFEKYLKEHVKV--EGKTNNL-RITLSSPGIRRKSLSPQTFLFQR 321
           I   HP  + I+ +G  EK  KE +KV  EGK  +  R  ++S   +R  L PQ  LF+ 
Sbjct: 99  IKLMHPVPEEIV-IGMCEKE-KERIKVIEEGKLGSWERAVVTSDEPKRSELDPQRTLFET 156

Query: 322 G 324
           G
Sbjct: 157 G 157


>SB_47669| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 708

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 22/57 (38%), Positives = 31/57 (54%), Gaps = 3/57 (5%)
 Frame = +1

Query: 163 HPAEDSILDVGNFEKYLKEHVKV--EGKTNNL-RITLSSPGIRRKSLSPQTFLFQRG 324
           HP  + I+ +G  EK  KE VKV  +GK  +  R  ++S   +R  L PQ  LF+ G
Sbjct: 484 HPVPEEIV-IGMCEKE-KERVKVIEDGKLGSWERAVVTSDEPKRSELDPQRTLFETG 538


>SB_19339| Best HMM Match : Transposase_21 (HMM E-Value=5.6e-05)
          Length = 290

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 15/42 (35%), Positives = 24/42 (57%)
 Frame = +1

Query: 154 DCTHPAEDSILDVGNFEKYLKEHVKVEGKTNNLRITLSSPGI 279
           +C    ED I+D  N++ + KEHV +    NN  I L++ G+
Sbjct: 84  NCPENIED-IIDGENYQLFFKEHVFLR-NPNNFAIQLNTDGV 123


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,167,831
Number of Sequences: 59808
Number of extensions: 229391
Number of successful extensions: 475
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 457
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 475
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1136110413
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)