Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30086
         (513 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g27770.1 68418.m03330 60S ribosomal protein L22 (RPL22C) ribo...    46   1e-05
At3g05560.2 68416.m00614 60S ribosomal protein L22-2 (RPL22B) id...    46   1e-05
At3g05560.1 68416.m00613 60S ribosomal protein L22-2 (RPL22B) id...    46   1e-05
At1g02830.1 68414.m00243 60S ribosomal protein L22 (RPL22A) simi...    46   1e-05
At3g60970.1 68416.m06823 ABC transporter family protein ABC tran...    27   5.6  
At1g04120.1 68414.m00401 ABC transporter family protein Strong s...    27   5.6  
At5g56160.1 68418.m07006 SEC14 cytosolic factor family protein /...    27   9.8  
At5g12150.1 68418.m01426 pleckstrin homology (PH) domain-contain...    27   9.8  
At3g52140.1 68416.m05723 tetratricopeptide repeat (TPR)-containi...    27   9.8  

>At5g27770.1 68418.m03330 60S ribosomal protein L22 (RPL22C)
           ribosomal protein L22 (cytosolic), Rattus norvegicus,
           PIR:S52084
          Length = 124

 Score = 46.4 bits (105), Expect = 1e-05
 Identities = 18/43 (41%), Positives = 30/43 (69%)
 Frame = +1

Query: 139 LKFTIDCTHPAEDSILDVGNFEKYLKEHVKVEGKTNNLRITLS 267
           + FTIDC+ P +D I+++ + EK+L+E +KV GK   L  ++S
Sbjct: 16  VSFTIDCSKPVDDKIMEIASLEKFLQERIKVGGKAGALGDSVS 58



 Score = 41.1 bits (92), Expect = 4e-04
 Identities = 22/57 (38%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
 Frame = +3

Query: 261 VVVARDKTKVAITADIPFSXXXXXXXXXXXXXXXXXXDWLRVVASAHD--AYELRYF 425
           V + R+K+K+ +TAD  FS                  DWLRV+A+  D   YELRYF
Sbjct: 57  VSITREKSKITVTADGQFSKRYLKYLTKKYLKKHNVRDWLRVIAANKDRNLYELRYF 113


>At3g05560.2 68416.m00614 60S ribosomal protein L22-2 (RPL22B)
           identical to 60S ribosomal protein L22-2 SP:Q9M9W1 from
           [Arabidopsis thaliana]
          Length = 124

 Score = 46.0 bits (104), Expect = 1e-05
 Identities = 17/38 (44%), Positives = 27/38 (71%)
 Frame = +1

Query: 139 LKFTIDCTHPAEDSILDVGNFEKYLKEHVKVEGKTNNL 252
           + FTIDC+ P +D I+++ + EK+L+E +KV GK   L
Sbjct: 16  VSFTIDCSKPVDDKIMEIASLEKFLQERIKVGGKAGAL 53



 Score = 41.9 bits (94), Expect = 2e-04
 Identities = 22/57 (38%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
 Frame = +3

Query: 261 VVVARDKTKVAITADIPFSXXXXXXXXXXXXXXXXXXDWLRVVASAHD--AYELRYF 425
           V + R+K+K+ +TAD  FS                  DWLRV+A+  D   YELRYF
Sbjct: 57  VTITREKSKITVTADGQFSKRYLKYLTKKYLKKHNVRDWLRVIAANKDRNLYELRYF 113


>At3g05560.1 68416.m00613 60S ribosomal protein L22-2 (RPL22B)
           identical to 60S ribosomal protein L22-2 SP:Q9M9W1 from
           [Arabidopsis thaliana]
          Length = 124

 Score = 46.0 bits (104), Expect = 1e-05
 Identities = 17/38 (44%), Positives = 27/38 (71%)
 Frame = +1

Query: 139 LKFTIDCTHPAEDSILDVGNFEKYLKEHVKVEGKTNNL 252
           + FTIDC+ P +D I+++ + EK+L+E +KV GK   L
Sbjct: 16  VSFTIDCSKPVDDKIMEIASLEKFLQERIKVGGKAGAL 53



 Score = 41.9 bits (94), Expect = 2e-04
 Identities = 22/57 (38%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
 Frame = +3

Query: 261 VVVARDKTKVAITADIPFSXXXXXXXXXXXXXXXXXXDWLRVVASAHD--AYELRYF 425
           V + R+K+K+ +TAD  FS                  DWLRV+A+  D   YELRYF
Sbjct: 57  VTITREKSKITVTADGQFSKRYLKYLTKKYLKKHNVRDWLRVIAANKDRNLYELRYF 113


>At1g02830.1 68414.m00243 60S ribosomal protein L22 (RPL22A) similar
           to ribosomal protein L22 GI:710294 from [Rattus
           norvegicus]
          Length = 127

 Score = 46.0 bits (104), Expect = 1e-05
 Identities = 18/43 (41%), Positives = 29/43 (67%)
 Frame = +1

Query: 139 LKFTIDCTHPAEDSILDVGNFEKYLKEHVKVEGKTNNLRITLS 267
           + F IDC+ P +D+IL++   EK+L+E +KV GK   L  ++S
Sbjct: 18  VSFVIDCSKPVDDTILEIATLEKFLQERIKVRGKAGALGNSVS 60



 Score = 33.9 bits (74), Expect = 0.065
 Identities = 20/59 (33%), Positives = 26/59 (44%), Gaps = 2/59 (3%)
 Frame = +3

Query: 255 NHVVVARDKTKVAITADIPFSXXXXXXXXXXXXXXXXXXDWLRVVASAHD--AYELRYF 425
           N V + R   K+ + A+  FS                  DWLRV+AS  D   YE+RYF
Sbjct: 57  NSVSITRYNGKINVNANSNFSKRYLKYLTKKYLKKYNLRDWLRVIASNKDKNVYEVRYF 115


>At3g60970.1 68416.m06823 ABC transporter family protein ABC
           transporter-like proteins
          Length = 1037

 Score = 27.5 bits (58), Expect = 5.6
 Identities = 12/40 (30%), Positives = 21/40 (52%)
 Frame = -2

Query: 242 VLPSTLTCSFKYFSKLPTSKILSSAGCVQSIVNFKLIFRL 123
           +L S       YF   PT +IL+ A   QS+++ ++  +L
Sbjct: 560 MLCSIFRAPMSYFDSTPTGRILNRASTDQSVLDLEMAVKL 599


>At1g04120.1 68414.m00401 ABC transporter family protein Strong
            similarity to MRP-like ABC transporter gb|U92650 from A.
            thaliana and canalicular multi-drug resistance protein
            gb|L49379 from Rattus norvegicus
          Length = 1514

 Score = 27.5 bits (58), Expect = 5.6
 Identities = 14/44 (31%), Positives = 21/44 (47%)
 Frame = -2

Query: 254  LRLFVLPSTLTCSFKYFSKLPTSKILSSAGCVQSIVNFKLIFRL 123
            L L +L S       +F   P  +IL+     QS+V+  + FRL
Sbjct: 1022 LFLNMLRSVFRAPMSFFDSTPAGRILNRVSIDQSVVDLDIPFRL 1065


>At5g56160.1 68418.m07006 SEC14 cytosolic factor family protein /
           phosphoglyceride transfer family protein similar to
           similar to phosphatidylinositol transfer-like protein IV
           (GI:14486707) [Lotus japonicus] and SEC14 cytosolic
           factor (SP:P45816) [Candida lipolytica]
          Length = 592

 Score = 26.6 bits (56), Expect = 9.8
 Identities = 15/54 (27%), Positives = 27/54 (50%)
 Frame = +1

Query: 163 HPAEDSILDVGNFEKYLKEHVKVEGKTNNLRITLSSPGIRRKSLSPQTFLFQRG 324
           HP +  +++V   E+YLK HV+   +T   ++   S   +R+  +  T L   G
Sbjct: 182 HPGK--LMEVTTIERYLKYHVQEFERTLQEKLPACSVAAKRRVTTTTTILDVEG 233


>At5g12150.1 68418.m01426 pleckstrin homology (PH) domain-containing
           protein / RhoGAP domain-containing protein weak
           similarity to glucocorticoid receptor DNA binding factor
           1 [Canis familiaris] GI:23266717; contains Pfam profiles
           PF00169: PH domain, PF00620: RhoGAP domain
          Length = 827

 Score = 26.6 bits (56), Expect = 9.8
 Identities = 12/34 (35%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
 Frame = -2

Query: 443 AVSVDVEVAQFVSVMS-GGHHSKPVTQIVLLEVT 345
           A S+ + + ++  VM  G HH  P T   L+E+T
Sbjct: 754 AASLGIPMEEYSPVMDYGRHHHPPATSAALMELT 787


>At3g52140.1 68416.m05723 tetratricopeptide repeat (TPR)-containing
           protein contains Pfam profile PF00515: TPR Domain
          Length = 1403

 Score = 26.6 bits (56), Expect = 9.8
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = -2

Query: 299 GDSDFRLIPGDDNVILRLFVLPSTLTCSFKYFSKLPTSK 183
           G  + +L PGD  + +R F+L +  TC F  +  L  +K
Sbjct: 118 GKMELQLNPGDSVMDIRQFLLDAPETCYFTCYELLLRNK 156


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,083,369
Number of Sequences: 28952
Number of extensions: 155239
Number of successful extensions: 385
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 374
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 382
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 927799552
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)