Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30084
         (658 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1683.13c |||transcription factor |Schizosaccharomyces pombe|...    27   2.4  
SPAC13G6.13 ||SPAC24B11.02|sequence orphan|Schizosaccharomyces p...    27   3.1  
SPAC1786.02 |||phospholipase |Schizosaccharomyces pombe|chr 1|||...    26   4.2  
SPAC29A4.15 |||serine-tRNA ligase|Schizosaccharomyces pombe|chr ...    25   9.6  

>SPBC1683.13c |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 618

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = -1

Query: 523 VGTLKLFFKKYNKNCFPSKIV*IS 452
           V  LK++FKKY+ +C P   + I+
Sbjct: 499 VQLLKIYFKKYDADCLPMTFIHIA 522


>SPAC13G6.13 ||SPAC24B11.02|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 115

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = -3

Query: 326 KIKLCFYMYPQTHLDLFVLQGKKRIYLVLCSV 231
           K+K  F+M  + HL   +    K I +++CSV
Sbjct: 54  KLKCTFFMIEEWHLLAILYDKSKYIKIIICSV 85


>SPAC1786.02 |||phospholipase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 644

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = +2

Query: 416 LSVLIVNKFNMLRNLHYF*WKTIFVIFFKEQ 508
           LS L VN+F  ++N+    W T   IFF E+
Sbjct: 165 LSSLAVNEFRTIQNISKSIWYTRLGIFFIEE 195


>SPAC29A4.15 |||serine-tRNA ligase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 450

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
 Frame = +2

Query: 284 LNVFEDTYKNRVLFYSIMYKFSH*LPKCWLQLYDSECWY-FQNK 412
           +N  ED YK+  L Y I+   S  L     + YD E W+ FQ +
Sbjct: 312 INHAEDFYKSLELPYRIVAIVSGALNNAAAKKYDLEAWFPFQGE 355


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,596,722
Number of Sequences: 5004
Number of extensions: 54376
Number of successful extensions: 114
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 113
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 114
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 297805304
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)