Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30084
         (658 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_03_0221 - 16554910-16555560                                         29   2.5  
06_03_0436 + 20755816-20756025,20756124-20756240,20756942-207571...    28   5.7  
01_01_1060 - 8363272-8365912,8366375-8366443,8366479-8366843,836...    27   9.9  

>02_03_0221 - 16554910-16555560
          Length = 216

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 13/26 (50%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
 Frame = +2

Query: 26  ALLLCLIGCCPCACIPYC-TDSCKDA 100
           AL  CL+G C   C   C TDS +DA
Sbjct: 78  ALTACLVGACALCCFLLCFTDSYRDA 103


>06_03_0436 +
           20755816-20756025,20756124-20756240,20756942-20757137,
           20757393-20757544,20757653-20757736,20757848-20757925,
           20757958-20758116,20758219-20758251,20759119-20759826,
           20759917-20759998,20760093-20760449,20760586-20760692,
           20760796-20761001,20761480-20761623,20761715-20761800,
           20762120-20762283,20762559-20763119
          Length = 1147

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 14/33 (42%), Positives = 20/33 (60%)
 Frame = +2

Query: 143 NR*IFQLVQ*IINCKNNILVLLFNSILSYELSI 241
           NR +F  VQ +  CK N +  L+  IL+Y+L I
Sbjct: 627 NRKLFNEVQELKGCKANSIAHLYADILNYQLLI 659


>01_01_1060 -
           8363272-8365912,8366375-8366443,8366479-8366843,
           8367403-8367550,8367630-8367873,8368105-8368407,
           8368639-8368851,8368927-8369002,8369533-8369561,
           8369610-8369984,8371784-8371927,8374053-8374086
          Length = 1546

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 11/36 (30%), Positives = 21/36 (58%)
 Frame = +3

Query: 549 RYLNITPVSCIFVYFLITFI*LMYFITLCKRIKKKK 656
           +++++  + CIF+  LI  + +  FI  CK  K K+
Sbjct: 248 KHMSLITIICIFIGALIAVLVIAMFICFCKLRKGKR 283


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,689,519
Number of Sequences: 37544
Number of extensions: 274758
Number of successful extensions: 704
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 695
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 704
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1644004708
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)