Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30084
(658 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_42290| Best HMM Match : Band_41 (HMM E-Value=3.6e-09) 33 0.27
SB_44745| Best HMM Match : zf-C2H2 (HMM E-Value=2.2e-05) 31 1.1
SB_53329| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.1
SB_8350| Best HMM Match : ShTK (HMM E-Value=2.5e-09) 30 1.4
SB_36935| Best HMM Match : Somatomedin_B (HMM E-Value=1.8e-06) 29 3.3
SB_38952| Best HMM Match : 7tm_2 (HMM E-Value=1.7e-21) 29 3.3
SB_35568| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.4
SB_6299| Best HMM Match : RVT_1 (HMM E-Value=6.1e-33) 29 4.4
SB_19475| Best HMM Match : C_tripleX (HMM E-Value=0.1) 28 5.8
SB_26070| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.8
SB_20359| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.8
>SB_42290| Best HMM Match : Band_41 (HMM E-Value=3.6e-09)
Length = 474
Score = 32.7 bits (71), Expect = 0.27
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = +2
Query: 53 CPCACIPYCTDSCKDANHYCPNCNAYI 133
CPC + YC +C +YCP C +I
Sbjct: 419 CPCGHV-YCCQTCASNLYYCPLCKTFI 444
Score = 30.3 bits (65), Expect = 1.4
Identities = 11/37 (29%), Positives = 18/37 (48%)
Frame = +2
Query: 53 CPCACIPYCTDSCKDANHYCPNCNAYIGSYNR*IFQL 163
CPC + +C+ C D +CP CN + + F +
Sbjct: 362 CPCGHLMFCS-RCADNMKFCPLCNESVNGNQKIYFAM 397
>SB_44745| Best HMM Match : zf-C2H2 (HMM E-Value=2.2e-05)
Length = 572
Score = 30.7 bits (66), Expect = 1.1
Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Frame = -1
Query: 586 TKMQLTGVIFKYLKLQSVV*NVGTLKLFFKKYN-KNCFPSKI 464
TKM +++ L + +GTLK F +KYN +N P K+
Sbjct: 218 TKMSFLQLVYTKLYSAESIREIGTLKFFREKYNRRNVTPEKV 259
>SB_53329| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 261
Score = 30.7 bits (66), Expect = 1.1
Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Frame = -1
Query: 586 TKMQLTGVIFKYLKLQSVV*NVGTLKLFFKKYN-KNCFPSKI 464
TKM +++ L + +GTLK F +KYN +N P K+
Sbjct: 218 TKMSFLQLVYTKLYSAESIREIGTLKFFREKYNRRNVTPEKV 259
>SB_8350| Best HMM Match : ShTK (HMM E-Value=2.5e-09)
Length = 1103
Score = 30.3 bits (65), Expect = 1.4
Identities = 11/30 (36%), Positives = 15/30 (50%)
Frame = +2
Query: 44 IGCCPCACIPYCTDSCKDANHYCPNCNAYI 133
I CP C P C+D C Y PN + ++
Sbjct: 705 IAPCPQVCAPACSDICCGFGAYAPNPDTHV 734
>SB_36935| Best HMM Match : Somatomedin_B (HMM E-Value=1.8e-06)
Length = 231
Score = 29.1 bits (62), Expect = 3.3
Identities = 11/22 (50%), Positives = 13/22 (59%), Gaps = 3/22 (13%)
Frame = +2
Query: 59 CACIPYCT---DSCKDANHYCP 115
C C PYCT D C D + +CP
Sbjct: 209 CRCDPYCTSFKDCCADFDTFCP 230
>SB_38952| Best HMM Match : 7tm_2 (HMM E-Value=1.7e-21)
Length = 959
Score = 29.1 bits (62), Expect = 3.3
Identities = 11/22 (50%), Positives = 13/22 (59%), Gaps = 3/22 (13%)
Frame = +2
Query: 59 CACIPYCT---DSCKDANHYCP 115
C C PYCT D C D + +CP
Sbjct: 142 CRCDPYCTSFKDCCADFDTFCP 163
>SB_35568| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 582
Score = 28.7 bits (61), Expect = 4.4
Identities = 9/24 (37%), Positives = 21/24 (87%)
Frame = +1
Query: 100 KPLLSELQRVHWKLQSLNISVGSI 171
KPL S +Q++H+K++++N+++ +I
Sbjct: 530 KPLNSLVQKIHFKMENINVALDAI 553
>SB_6299| Best HMM Match : RVT_1 (HMM E-Value=6.1e-33)
Length = 283
Score = 28.7 bits (61), Expect = 4.4
Identities = 9/24 (37%), Positives = 21/24 (87%)
Frame = +1
Query: 100 KPLLSELQRVHWKLQSLNISVGSI 171
KPL S +Q++H+K++++N+++ +I
Sbjct: 101 KPLNSFVQKIHFKMENINVALDAI 124
>SB_19475| Best HMM Match : C_tripleX (HMM E-Value=0.1)
Length = 530
Score = 28.3 bits (60), Expect = 5.8
Identities = 12/29 (41%), Positives = 14/29 (48%)
Frame = +2
Query: 32 LLCLIGCCPCACIPYCTDSCKDANHYCPN 118
L C +GC P C P CT +C PN
Sbjct: 441 LTCPVGC-PSMCAPSCTPACCAEQQCWPN 468
>SB_26070| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 96
Score = 28.3 bits (60), Expect = 5.8
Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Frame = -3
Query: 125 RCNSDSNGLHLCRSPCSKGYKH-MGNNLLGK 36
RC DSN + ++ C K Y++ G+NL GK
Sbjct: 3 RCEQDSNLRGILQTKCRKMYRYGQGSNLRGK 33
>SB_20359| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 4700
Score = 28.3 bits (60), Expect = 5.8
Identities = 15/51 (29%), Positives = 30/51 (58%), Gaps = 5/51 (9%)
Frame = +2
Query: 188 NNILVLLFNS----ILSYELSI-ALNRFAFYLEEQIGLNVFEDTYKNRVLF 325
+N LV+ +S + SYE N+ +Y++++ GLN+ +D +KN + +
Sbjct: 638 HNSLVITLSSAAQLVPSYEFPTNTKNKSVYYIKKEKGLNIGKDNFKNALSY 688
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,189,688
Number of Sequences: 59808
Number of extensions: 365052
Number of successful extensions: 847
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 710
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 843
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1681430875
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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