Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30077
(698 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC13G7.02c |ssa1||heat shock protein Ssa1|Schizosaccharomyces ... 146 4e-36
SPCC1739.13 |ssa2||heat shock protein Ssa2|Schizosaccharomyces p... 144 1e-35
SPAC22A12.15c |bip1|bip|BiP |Schizosaccharomyces pombe|chr 1|||M... 125 5e-30
SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyce... 106 3e-24
SPBC1709.05 |sks2|hsc1|heat shock protein Sks2|Schizosaccharomyc... 93 5e-20
SPBC16C6.05 |||translation initiation factor |Schizosaccharomyce... 30 0.28
SPCC663.03 |pmd1||leptomycin efflux transporter Pmd1|Schizosacch... 29 0.64
SPAC23H4.15 |||ribosome biogenesis protein Tsr1 |Schizosaccharom... 29 0.85
SPBC16E9.13 |ksp1|ppk20|serine/threonine protein kinase Ksp1 |Sc... 28 1.5
SPCC126.03 |pus1|SPCC126.03, SPCC126.03|tRNA pseudouridylate syn... 27 2.6
SPBC3B9.02c |cwf28||splicing factor Cwf28|Schizosaccharomyces po... 27 2.6
SPBC1734.01c ||SPBC337.17c|RNA-binding protein|Schizosaccharomyc... 27 3.4
SPAC10F6.08c |||HMG box protein|Schizosaccharomyces pombe|chr 1|... 25 7.9
SPAC1556.07 |pmm1||phosphomannomutase Pmm1|Schizosaccharomyces p... 25 7.9
SPAC2C4.15c |ubx2|ucp13|UBX domain protein Ubx2|Schizosaccharomy... 25 7.9
SPBC14F5.03c |kap123||karyopherin Kap123|Schizosaccharomyces pom... 25 7.9
SPAC328.02 |||Ariadne homolog|Schizosaccharomyces pombe|chr 1|||... 25 7.9
SPAC13C5.02 |dre4||DNA replication protein Dre4|Schizosaccharomy... 25 7.9
SPAC22F8.10c |sap145||U2 snRNP-associated protein Sap145 |Schizo... 25 7.9
SPCC825.02 |||glucosidase II Gtb1 |Schizosaccharomyces pombe|chr... 25 7.9
SPAC2F7.03c |pom1||DYRK family protein kinase Pom1|Schizosacchar... 25 7.9
>SPAC13G7.02c |ssa1||heat shock protein Ssa1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 644
Score = 146 bits (353), Expect = 4e-36
Identities = 68/90 (75%), Positives = 78/90 (86%)
Frame = +1
Query: 1 DNNLLGKFELTGIPPAPRGVPQIEVTFDIDANGILNVSAIEKSTNKENKITITNDKGRLS 180
D NLLGKFEL+GIPPAPRGVPQIEVTFD+DANGILNVSA+EK T K KITITNDKGRLS
Sbjct: 450 DCNLLGKFELSGIPPAPRGVPQIEVTFDVDANGILNVSALEKGTGKTQKITITNDKGRLS 509
Query: 181 KEEIERMVNEAEKYRNEDDKQKETIRPRMH 270
KEEI+RMV+EAEKY+ ED+ + I+ + H
Sbjct: 510 KEEIDRMVSEAEKYKAEDEAETSRIQAKNH 539
Score = 104 bits (250), Expect = 1e-23
Identities = 47/84 (55%), Positives = 63/84 (75%)
Frame = +3
Query: 255 QAKNALESYCFSMKSTMEDEKLKEKISDSDKQTILDKCNDTIKWLDSNQLADKEEYEHKQ 434
QAKN LESY +S++++++D LK+K+ SDK+ I +TI+WLD N A K+EYE KQ
Sbjct: 535 QAKNHLESYAYSLRNSLDDPNLKDKVDASDKEAIDKAVKETIEWLDHNTTAAKDEYEDKQ 594
Query: 435 KELEGICNPIITKMYQGAGGVPGG 506
KELEG+ NPI+ K+YQ AGG PGG
Sbjct: 595 KELEGVANPIMAKIYQ-AGGAPGG 617
>SPCC1739.13 |ssa2||heat shock protein Ssa2|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 647
Score = 144 bits (349), Expect = 1e-35
Identities = 68/90 (75%), Positives = 77/90 (85%)
Frame = +1
Query: 1 DNNLLGKFELTGIPPAPRGVPQIEVTFDIDANGILNVSAIEKSTNKENKITITNDKGRLS 180
D NLLGKFEL+GIPPAPRGVPQIEVTFD+DANGILNVSA+EK T K KITITNDKGRLS
Sbjct: 450 DCNLLGKFELSGIPPAPRGVPQIEVTFDVDANGILNVSALEKGTGKTQKITITNDKGRLS 509
Query: 181 KEEIERMVNEAEKYRNEDDKQKETIRPRMH 270
KEEI+RMV EAEKY+ ED+ + I+ + H
Sbjct: 510 KEEIDRMVAEAEKYKAEDEAESGRIQAKNH 539
Score = 104 bits (250), Expect = 1e-23
Identities = 47/88 (53%), Positives = 66/88 (75%)
Frame = +3
Query: 246 GDHQAKNALESYCFSMKSTMEDEKLKEKISDSDKQTILDKCNDTIKWLDSNQLADKEEYE 425
G QAKN LESY +S++++++D LK+K+ SDK+T+ +TI+WLDSN A K+E+E
Sbjct: 532 GRIQAKNHLESYAYSLRNSLDDPNLKDKVDASDKETVDKAVKETIEWLDSNTTAAKDEFE 591
Query: 426 HKQKELEGICNPIITKMYQGAGGVPGGI 509
KQKELE + NPI+ K+YQ AGG PGG+
Sbjct: 592 AKQKELESVANPIMAKIYQ-AGGAPGGM 618
>SPAC22A12.15c |bip1|bip|BiP |Schizosaccharomyces pombe|chr
1|||Manual
Length = 663
Score = 125 bits (302), Expect = 5e-30
Identities = 60/89 (67%), Positives = 71/89 (79%), Gaps = 1/89 (1%)
Frame = +1
Query: 1 DNNLLGKFELTGIPPAPRGVPQIEVTFDIDANGILNVSAIEKS-TNKENKITITNDKGRL 177
DNNLLGKF+L GIPPAPRGVPQIEVTF++DANG+L VSA++KS K K+ I NDKGRL
Sbjct: 479 DNNLLGKFDLRGIPPAPRGVPQIEVTFEVDANGVLTVSAVDKSGKGKPEKLVIKNDKGRL 538
Query: 178 SKEEIERMVNEAEKYRNEDDKQKETIRPR 264
S+E+IERMV EAE++ ED KE I R
Sbjct: 539 SEEDIERMVKEAEEFAEEDKILKERIEAR 567
Score = 68.1 bits (159), Expect = 1e-12
Identities = 32/82 (39%), Positives = 55/82 (67%), Gaps = 3/82 (3%)
Frame = +3
Query: 255 QAKNALESYCFSMKSTMED-EKLKEKISDSDKQTILDKCNDTIKWLDSN-QLADKEEYEH 428
+A+N LE+Y +S+K +D E+L K+ DKQ +LD D +WL+ + + A KEE+E
Sbjct: 565 EARNTLENYAYSLKGQFDDDEQLGGKVDPEDKQAVLDAVEDVAEWLEIHGEDASKEEFED 624
Query: 429 KQKELEGICNPIITKMY-QGAG 491
++++L+ + +PI K+Y +GAG
Sbjct: 625 QRQKLDAVVHPITQKLYSEGAG 646
>SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 674
Score = 106 bits (254), Expect = 3e-24
Identities = 50/85 (58%), Positives = 65/85 (76%)
Frame = +1
Query: 1 DNNLLGKFELTGIPPAPRGVPQIEVTFDIDANGILNVSAIEKSTNKENKITITNDKGRLS 180
DN L+G F+LTGI PAP+G PQIEV+FD+DA+GI+NVSA +K+TNK++ IT+ G L+
Sbjct: 493 DNKLIGNFQLTGIAPAPKGQPQIEVSFDVDADGIINVSARDKATNKDSSITVAGSSG-LT 551
Query: 181 KEEIERMVNEAEKYRNEDDKQKETI 255
EIE MV +AEKYR D +KE I
Sbjct: 552 DSEIEAMVADAEKYRASDMARKEAI 576
>SPBC1709.05 |sks2|hsc1|heat shock protein Sks2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 613
Score = 92.7 bits (220), Expect = 5e-20
Identities = 39/78 (50%), Positives = 57/78 (73%)
Frame = +1
Query: 1 DNNLLGKFELTGIPPAPRGVPQIEVTFDIDANGILNVSAIEKSTNKENKITITNDKGRLS 180
+N LG+F+LTGIPP PRG ++E TF++DANGIL V+A+EK+T + I ITN G LS
Sbjct: 455 ENEPLGEFQLTGIPPMPRGQAELEATFELDANGILKVTAVEKTTGRSAHIEITNSVGHLS 514
Query: 181 KEEIERMVNEAEKYRNED 234
+I+ M+ A+K++ +D
Sbjct: 515 STKIQEMIENADKFKQQD 532
>SPBC16C6.05 |||translation initiation factor |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 190
Score = 30.3 bits (65), Expect = 0.28
Identities = 16/53 (30%), Positives = 27/53 (50%)
Frame = +1
Query: 88 DANGILNVSAIEKSTNKENKITITNDKGRLSKEEIERMVNEAEKYRNEDDKQK 246
D LNVS + S +E +T ++ R+ +EE +RM ++ E K+K
Sbjct: 58 DLENTLNVSGTKDSNAEEQPAKLTKEEKRVEREEAKRMASKVLIKTIERTKRK 110
>SPCC663.03 |pmd1||leptomycin efflux transporter
Pmd1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1362
Score = 29.1 bits (62), Expect = 0.64
Identities = 14/24 (58%), Positives = 16/24 (66%)
Frame = +1
Query: 166 KGRLSKEEIERMVNEAEKYRNEDD 237
KG LSKEE+ER V +A K N D
Sbjct: 525 KGTLSKEELERRVYDAAKLANAYD 548
>SPAC23H4.15 |||ribosome biogenesis protein Tsr1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 783
Score = 28.7 bits (61), Expect = 0.85
Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Frame = +3
Query: 321 KEKISDSDKQTILD-KCNDTIKWLDSNQLADKEEYEHKQKELE 446
+EKI +++TI D K + + ++ EEY KQKEL+
Sbjct: 427 EEKIDSDEEETIDDAKSEMFVDLSEEEEVRQYEEYRKKQKELQ 469
>SPBC16E9.13 |ksp1|ppk20|serine/threonine protein kinase Ksp1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 474
Score = 27.9 bits (59), Expect = 1.5
Identities = 15/44 (34%), Positives = 22/44 (50%)
Frame = +1
Query: 103 LNVSAIEKSTNKENKITITNDKGRLSKEEIERMVNEAEKYRNED 234
L VS ++S K + + K EE+E VNE E++R D
Sbjct: 257 LCVSPEKRSLAKTREAVLAVTKWTTDDEELESFVNEEEEFRASD 300
>SPCC126.03 |pus1|SPCC126.03, SPCC126.03|tRNA pseudouridylate
synthase Lsp1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 534
Score = 27.1 bits (57), Expect = 2.6
Identities = 15/32 (46%), Positives = 20/32 (62%)
Frame = +3
Query: 243 KGDHQAKNALESYCFSMKSTMEDEKLKEKISD 338
KG H A N + S+K MEDEKL EK+++
Sbjct: 104 KGVHAAGNVI-----SLKLIMEDEKLIEKVNE 130
>SPBC3B9.02c |cwf28||splicing factor Cwf28|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 381
Score = 27.1 bits (57), Expect = 2.6
Identities = 13/36 (36%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Frame = +3
Query: 96 RYPKRFRYREVHQQGEQDHHYQRQRSS-LQGRDRAY 200
R P R +YRE H + + H R QGR +Y
Sbjct: 320 RDPDRTKYREYHSERRKQHRTDRYSDDYYQGRSYSY 355
>SPBC1734.01c ||SPBC337.17c|RNA-binding protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 682
Score = 26.6 bits (56), Expect = 3.4
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = +1
Query: 133 NKENKITITNDKGRLSKEEIERMVNEAE 216
NK+ K T D SKEE+E +V E E
Sbjct: 529 NKKGKHTQIEDPTAASKEELENLVREDE 556
>SPAC10F6.08c |||HMG box protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 341
Score = 25.4 bits (53), Expect = 7.9
Identities = 20/64 (31%), Positives = 31/64 (48%)
Frame = +3
Query: 255 QAKNALESYCFSMKSTMEDEKLKEKISDSDKQTILDKCNDTIKWLDSNQLADKEEYEHKQ 434
+A+ A + +E EK KEK D D++ DT+ D NQ+ +E E Q
Sbjct: 254 KAREARRRRSAQNSAKLEKEKAKEKQKDKDQE------QDTVS--DKNQI---DEIEKGQ 302
Query: 435 KELE 446
KE++
Sbjct: 303 KEVD 306
>SPAC1556.07 |pmm1||phosphomannomutase Pmm1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 257
Score = 25.4 bits (53), Expect = 7.9
Identities = 15/55 (27%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Frame = +1
Query: 58 VPQIEVTFDIDANGILNVSAIEKSTNKENKITITN-DKGRLSKEEIERMVNEAEK 219
+P TF NG++N+S + ++ N E + DKGR + + ++ E K
Sbjct: 122 IPVKRGTFIEFRNGMINISPVGRNANTEERNEFERFDKGRKIRATMVDVLREKFK 176
>SPAC2C4.15c |ubx2|ucp13|UBX domain protein Ubx2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 25.4 bits (53), Expect = 7.9
Identities = 13/22 (59%), Positives = 13/22 (59%)
Frame = -1
Query: 98 PLASMSKVTSI*GTPRGAGGIP 33
PLA MS TSI G G GG P
Sbjct: 81 PLADMSAGTSIMGNNFGFGGFP 102
>SPBC14F5.03c |kap123||karyopherin Kap123|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1067
Score = 25.4 bits (53), Expect = 7.9
Identities = 12/47 (25%), Positives = 26/47 (55%)
Frame = +1
Query: 109 VSAIEKSTNKENKITITNDKGRLSKEEIERMVNEAEKYRNEDDKQKE 249
V A+ KS +++ ++ G + EEI ++++ E E+D++ E
Sbjct: 597 VPALFKSIDQDESDILSERIGAPTAEEISQLLDSVETNEEENDEELE 643
>SPAC328.02 |||Ariadne homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 504
Score = 25.4 bits (53), Expect = 7.9
Identities = 12/28 (42%), Positives = 15/28 (53%), Gaps = 1/28 (3%)
Frame = -3
Query: 501 RGLLRHPGTSSLLSDCKCLPILSA-CAH 421
R ++ H GT + D CLP SA C H
Sbjct: 122 REVVHHEGTCEICYDEGCLPFFSAECDH 149
>SPAC13C5.02 |dre4||DNA replication protein Dre4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 411
Score = 25.4 bits (53), Expect = 7.9
Identities = 14/42 (33%), Positives = 20/42 (47%)
Frame = +3
Query: 261 KNALESYCFSMKSTMEDEKLKEKISDSDKQTILDKCNDTIKW 386
K E YC S+ ST + + K +SD T+L T+ W
Sbjct: 284 KEVFEEYCKSVVSTKKITRRKNTLSDF--WTLLHSLPSTLLW 323
>SPAC22F8.10c |sap145||U2 snRNP-associated protein Sap145
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 601
Score = 25.4 bits (53), Expect = 7.9
Identities = 14/43 (32%), Positives = 23/43 (53%)
Frame = +1
Query: 124 KSTNKENKITITNDKGRLSKEEIERMVNEAEKYRNEDDKQKET 252
K NK+++ + +K +L +E+ AEK N DDK + T
Sbjct: 39 KQKNKKSRNQVRREKKKLLREKTNSGAKLAEK--NSDDKDQLT 79
>SPCC825.02 |||glucosidase II Gtb1 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 506
Score = 25.4 bits (53), Expect = 7.9
Identities = 12/49 (24%), Positives = 25/49 (51%)
Frame = +3
Query: 243 KGDHQAKNALESYCFSMKSTMEDEKLKEKISDSDKQTILDKCNDTIKWL 389
K D K A+ S+ +++++++ K+S D L+ CN+ + L
Sbjct: 245 KFDETMKEAILSF-----EDLKEQEIRRKVSSDDVHNYLESCNNHLSML 288
>SPAC2F7.03c |pom1||DYRK family protein kinase
Pom1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1087
Score = 25.4 bits (53), Expect = 7.9
Identities = 14/47 (29%), Positives = 23/47 (48%)
Frame = +1
Query: 94 NGILNVSAIEKSTNKENKITITNDKGRLSKEEIERMVNEAEKYRNED 234
N + N S +KS+NKE + + RLS + + K ++ED
Sbjct: 409 NTVQNESKSQKSSNKEGRSSRGGFFSRLSFSRSSSRMKKGSKAKHED 455
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,396,418
Number of Sequences: 5004
Number of extensions: 42616
Number of successful extensions: 220
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 198
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 217
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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