Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30076
         (672 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0)                102   3e-22
SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43)           98   5e-21
SB_50386| Best HMM Match : GTP_EFTU (HMM E-Value=1.6e-09)              87   2e-17
SB_33922| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.48 
SB_733| Best HMM Match : DUF789 (HMM E-Value=1.3)                      31   1.1  
SB_19418| Best HMM Match : Mucin (HMM E-Value=0.024)                   30   1.5  
SB_43410| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-26)              29   2.6  
SB_13701| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.0  
SB_22651| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.9  

>SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0)
          Length = 322

 Score =  102 bits (244), Expect = 3e-22
 Identities = 46/54 (85%), Positives = 51/54 (94%)
 Frame = +2

Query: 509 RFETGVLKPGTIVVFSPANITTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKE 670
           R ETGVLKPGT+V FSP+NITTEVKSVEMHHE+L EA+PGDNVGFNVKNVSVK+
Sbjct: 125 RVETGVLKPGTVVTFSPSNITTEVKSVEMHHESLAEALPGDNVGFNVKNVSVKD 178



 Score = 95.5 bits (227), Expect = 3e-20
 Identities = 45/72 (62%), Positives = 53/72 (73%), Gaps = 6/72 (8%)
 Frame = +3

Query: 312 NMLEPSTKMPWFKGWQVER------KEGKADGKCLIEALDAILPPARPTDKPLRLPLQDV 473
           NM+  +++MPWFK W +ER      KE  A G  L E LD+ILPP+RP+  PLRLPLQDV
Sbjct: 53  NMITGTSQMPWFKQWTIERVDPATKKEANASGVTLFEGLDSILPPSRPSGLPLRLPLQDV 112

Query: 474 YKIGGIGTVPVG 509
           YKIGGIGTVPVG
Sbjct: 113 YKIGGIGTVPVG 124



 Score = 30.7 bits (66), Expect = 1.1
 Identities = 13/13 (100%), Positives = 13/13 (100%)
 Frame = +1

Query: 1  RDFIKNMITGTSQ 39
          RDFIKNMITGTSQ
Sbjct: 48 RDFIKNMITGTSQ 60


>SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43)
          Length = 547

 Score = 98.3 bits (234), Expect = 5e-21
 Identities = 43/86 (50%), Positives = 63/86 (73%)
 Frame = +1

Query: 1   RDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKM 180
           + F+ NMI+G +QAD  VL+++A  GEFE G  + GQTREHA+LA T GVK L++ VNKM
Sbjct: 233 KSFVPNMISGATQADLGVLVISARKGEFETGFERGGQTREHAMLAKTAGVKHLVILVNKM 292

Query: 181 DSTEPPYSEPRFEEIKKEVSSYIKKL 258
           D     ++E R+EEIK +++ ++KK+
Sbjct: 293 DDPTVKWNEERYEEIKVKLTPFLKKV 318


>SB_50386| Best HMM Match : GTP_EFTU (HMM E-Value=1.6e-09)
          Length = 123

 Score = 86.6 bits (205), Expect = 2e-17
 Identities = 40/61 (65%), Positives = 48/61 (78%)
 Frame = +1

Query: 1   RDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKM 180
           +DFI NMITG +QAD A+L+V A TGEFEAG    GQTREHA+L  +LGV QLIV +NK+
Sbjct: 24  KDFIPNMITGAAQADVAILVVDAITGEFEAGFESGGQTREHAILVRSLGVTQLIVAINKL 83

Query: 181 D 183
           D
Sbjct: 84  D 84


>SB_33922| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 312

 Score = 31.9 bits (69), Expect = 0.48
 Identities = 20/60 (33%), Positives = 28/60 (46%)
 Frame = -1

Query: 672 NSLTDTFFTLKPTLSPGTASWRASWCISTDLTSVVMLAGEKTTMVPGFNTPVSNLRRARY 493
           N  T T  T  PT++P    +  S  IS    SV+++AG    +V    TP    +RA Y
Sbjct: 2   NLTTVTPSTTTPTVTPSDRQYFLSKVISYAAVSVLIIAGNLLCLVVFLRTPQMRRKRAYY 61


>SB_733| Best HMM Match : DUF789 (HMM E-Value=1.3)
          Length = 356

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 23/74 (31%), Positives = 31/74 (41%), Gaps = 6/74 (8%)
 Frame = -2

Query: 539 YLVSTHQFQISDGHGTNT------TDFVYVLQGKTQGLVSGAGRWQDGIESFNEAFSVSF 378
           Y  STH+F  + G+  +T      TD V   Q    GLV G  + +    S   +   S+
Sbjct: 248 YQKSTHRFDFTQGYAISTSNETKNTDNVKPFQWVVPGLVVGGEKRKSEKASLFVSLKQSY 307

Query: 377 AFFTLHLPSLEPRH 336
            FFT   P L   H
Sbjct: 308 PFFTGKKPELYKLH 321


>SB_19418| Best HMM Match : Mucin (HMM E-Value=0.024)
          Length = 1213

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 21/72 (29%), Positives = 32/72 (44%), Gaps = 9/72 (12%)
 Frame = -2

Query: 248  MYEDTS---FLISSNLGSLYGGSVESILFTPTMSCLTPRVKASKAC------SRV*PFLE 96
            +Y+D S    L+S N   L   ++E IL TPT    +    + K C      +   P   
Sbjct: 796  LYQDPSKLTALLSCNFNDLKIDNMEVILLTPTSMAASMATSSKKVCPSSAPTTTTNPTPS 855

Query: 95   IPASNSPVPAAT 60
            +   NSP+P+ T
Sbjct: 856  VTNGNSPIPSGT 867


>SB_43410| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-26)
          Length = 541

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 18/77 (23%), Positives = 36/77 (46%)
 Frame = +1

Query: 19  MITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPP 198
           M+ G +  D A+L++A              QT EH      + +K +++  NK+D  +  
Sbjct: 81  MLNGAAVMDAALLLIAGNES------CPQPQTSEHLAAIEIMKLKHILILQNKIDLVKES 134

Query: 199 YSEPRFEEIKKEVSSYI 249
            ++ ++++I K V   I
Sbjct: 135 QAKDQYDQILKFVQGTI 151


>SB_13701| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 476

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 8/25 (32%), Positives = 14/25 (56%)
 Frame = +3

Query: 300 WHGDNMLEPSTKMPWFKGWQVERKE 374
           +H DN    +   PWF+ W  +++E
Sbjct: 191 YHNDNKTHSTQTGPWFRAWSNQKRE 215


>SB_22651| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 950

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 23/64 (35%), Positives = 35/64 (54%), Gaps = 1/64 (1%)
 Frame = +1

Query: 55  LIVAAGTGEFEAGISKNGQTREHALLAFTLGVK-QLIVGVNKMDSTEPPYSEPRFEEIKK 231
           ++VAA   EF A ++KNG     ++  F  G + QL +G + M+ TE P   P FE++K 
Sbjct: 371 VVVAACGAEFTAVVTKNG-----SVYTFGQGNQGQLGLGSSMME-TEFPERIPLFEKVKA 424

Query: 232 EVSS 243
              S
Sbjct: 425 RTVS 428


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,674,416
Number of Sequences: 59808
Number of extensions: 565580
Number of successful extensions: 1729
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1529
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1728
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1721264831
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)