Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30076
(672 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation fact... 157 9e-39
U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation fact... 157 9e-39
U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation fact... 157 9e-39
U51994-9|AAO21383.1| 267|Caenorhabditis elegans Elongation fact... 140 6e-34
Z81098-7|CAI79193.2| 592|Caenorhabditis elegans Hypothetical pr... 103 1e-22
Z81098-6|CAB03180.3| 610|Caenorhabditis elegans Hypothetical pr... 103 1e-22
Z92835-1|CAB07395.2| 532|Caenorhabditis elegans Hypothetical pr... 95 4e-20
U80437-9|AAN84843.1| 439|Caenorhabditis elegans Tu elongation f... 59 2e-09
AB010028-1|BAA31345.1| 439|Caenorhabditis elegans mitochondrial... 59 2e-09
D38472-1|BAA07492.1| 495|Caenorhabditis elegans elongation fact... 50 2e-06
D38471-1|BAA07491.1| 496|Caenorhabditis elegans elongation fact... 50 2e-06
AC024859-25|AAK29979.1| 496|Caenorhabditis elegans Tu elongatio... 50 2e-06
AC024817-55|AAF59563.3| 366|Caenorhabditis elegans Hypothetical... 33 0.14
AF039711-8|ABS19466.1| 766|Caenorhabditis elegans Hypothetical ... 31 0.99
U32275-1|AAA75370.1| 982|Caenorhabditis elegans serine-threonin... 29 2.3
U11280-5|AAA19437.1| 982|Caenorhabditis elegans Protein kinase ... 29 2.3
U11280-4|AAM97951.2| 353|Caenorhabditis elegans Protein kinase ... 29 2.3
Z99709-7|CAB16862.2| 500|Caenorhabditis elegans Hypothetical pr... 29 4.0
Z14092-9|CAA78474.1| 1429|Caenorhabditis elegans Hypothetical pr... 28 5.3
M12069-1|AAA70191.1| 1429|Caenorhabditis elegans protein ( C.ele... 28 5.3
U88315-18|ABO16437.1| 99|Caenorhabditis elegans Hypothetical p... 28 6.9
U88315-17|AAK68238.1| 132|Caenorhabditis elegans Hypothetical p... 28 6.9
U88315-16|AAK68237.1| 414|Caenorhabditis elegans Hypothetical p... 28 6.9
U42834-3|AAA83583.2| 860|Caenorhabditis elegans Hypothetical pr... 28 6.9
AL132862-18|CAB70230.2| 481|Caenorhabditis elegans Hypothetical... 28 6.9
Z69661-2|CAA93494.1| 925|Caenorhabditis elegans Hypothetical pr... 27 9.2
>U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation factor
protein 4, isoformd protein.
Length = 429
Score = 157 bits (380), Expect = 9e-39
Identities = 69/87 (79%), Positives = 78/87 (89%)
Frame = +3
Query: 249 QEIGYNPAAVAFVPISGWHGDNMLEPSTKMPWFKGWQVERKEGKADGKCLIEALDAILPP 428
++IGYNP AV FVPISG++GDNMLE S+ MPWFKGW VERKEG A GK L+EALD+I+PP
Sbjct: 145 KKIGYNPKAVPFVPISGFNGDNMLEVSSNMPWFKGWAVERKEGNASGKTLLEALDSIIPP 204
Query: 429 ARPTDKPLRLPLQDVYKIGGIGTVPVG 509
RPTD+PLRLPLQDVYKIGGIGTVPVG
Sbjct: 205 QRPTDRPLRLPLQDVYKIGGIGTVPVG 231
Score = 97.5 bits (232), Expect = 8e-21
Identities = 42/54 (77%), Positives = 49/54 (90%)
Frame = +2
Query: 509 RFETGVLKPGTIVVFSPANITTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKE 670
R ETG++KPG +V F+P N+TTEVKSVEMHHE+L EAVPGDNVGFNVKNVSVK+
Sbjct: 232 RVETGIIKPGMVVTFAPQNVTTEVKSVEMHHESLPEAVPGDNVGFNVKNVSVKD 285
Score = 52.8 bits (121), Expect(2) = 1e-15
Identities = 23/34 (67%), Positives = 27/34 (79%)
Frame = +1
Query: 157 LIVGVNKMDSTEPPYSEPRFEEIKKEVSSYIKKL 258
L+V NKMDSTEPP+SE RF EI EVS +IKK+
Sbjct: 114 LVVACNKMDSTEPPFSEARFTEITNEVSGFIKKI 147
Score = 47.6 bits (108), Expect(2) = 1e-15
Identities = 21/22 (95%), Positives = 22/22 (100%)
Frame = +1
Query: 1 RDFIKNMITGTSQADCAVLIVA 66
RDFIKNMITGTSQADCAVL+VA
Sbjct: 96 RDFIKNMITGTSQADCAVLVVA 117
>U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation factor
protein 4, isoforma protein.
Length = 463
Score = 157 bits (380), Expect = 9e-39
Identities = 69/87 (79%), Positives = 78/87 (89%)
Frame = +3
Query: 249 QEIGYNPAAVAFVPISGWHGDNMLEPSTKMPWFKGWQVERKEGKADGKCLIEALDAILPP 428
++IGYNP AV FVPISG++GDNMLE S+ MPWFKGW VERKEG A GK L+EALD+I+PP
Sbjct: 179 KKIGYNPKAVPFVPISGFNGDNMLEVSSNMPWFKGWAVERKEGNASGKTLLEALDSIIPP 238
Query: 429 ARPTDKPLRLPLQDVYKIGGIGTVPVG 509
RPTD+PLRLPLQDVYKIGGIGTVPVG
Sbjct: 239 QRPTDRPLRLPLQDVYKIGGIGTVPVG 265
Score = 152 bits (368), Expect = 3e-37
Identities = 73/86 (84%), Positives = 77/86 (89%)
Frame = +1
Query: 1 RDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKM 180
RDFIKNMITGTSQADCAVL+VA GTGEFEAGISKNGQTREHALLA TLGVKQLIV NKM
Sbjct: 96 RDFIKNMITGTSQADCAVLVVACGTGEFEAGISKNGQTREHALLAQTLGVKQLIVACNKM 155
Query: 181 DSTEPPYSEPRFEEIKKEVSSYIKKL 258
DSTEPP+SE RF EI EVS +IKK+
Sbjct: 156 DSTEPPFSEARFTEITNEVSGFIKKI 181
Score = 97.5 bits (232), Expect = 8e-21
Identities = 42/54 (77%), Positives = 49/54 (90%)
Frame = +2
Query: 509 RFETGVLKPGTIVVFSPANITTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKE 670
R ETG++KPG +V F+P N+TTEVKSVEMHHE+L EAVPGDNVGFNVKNVSVK+
Sbjct: 266 RVETGIIKPGMVVTFAPQNVTTEVKSVEMHHESLPEAVPGDNVGFNVKNVSVKD 319
>U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation factor
protein 3 protein.
Length = 463
Score = 157 bits (380), Expect = 9e-39
Identities = 69/87 (79%), Positives = 78/87 (89%)
Frame = +3
Query: 249 QEIGYNPAAVAFVPISGWHGDNMLEPSTKMPWFKGWQVERKEGKADGKCLIEALDAILPP 428
++IGYNP AV FVPISG++GDNMLE S+ MPWFKGW VERKEG A GK L+EALD+I+PP
Sbjct: 179 KKIGYNPKAVPFVPISGFNGDNMLEVSSNMPWFKGWAVERKEGNASGKTLLEALDSIIPP 238
Query: 429 ARPTDKPLRLPLQDVYKIGGIGTVPVG 509
RPTD+PLRLPLQDVYKIGGIGTVPVG
Sbjct: 239 QRPTDRPLRLPLQDVYKIGGIGTVPVG 265
Score = 152 bits (368), Expect = 3e-37
Identities = 73/86 (84%), Positives = 77/86 (89%)
Frame = +1
Query: 1 RDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKM 180
RDFIKNMITGTSQADCAVL+VA GTGEFEAGISKNGQTREHALLA TLGVKQLIV NKM
Sbjct: 96 RDFIKNMITGTSQADCAVLVVACGTGEFEAGISKNGQTREHALLAQTLGVKQLIVACNKM 155
Query: 181 DSTEPPYSEPRFEEIKKEVSSYIKKL 258
DSTEPP+SE RF EI EVS +IKK+
Sbjct: 156 DSTEPPFSEARFTEITNEVSGFIKKI 181
Score = 97.5 bits (232), Expect = 8e-21
Identities = 42/54 (77%), Positives = 49/54 (90%)
Frame = +2
Query: 509 RFETGVLKPGTIVVFSPANITTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKE 670
R ETG++KPG +V F+P N+TTEVKSVEMHHE+L EAVPGDNVGFNVKNVSVK+
Sbjct: 266 RVETGIIKPGMVVTFAPQNVTTEVKSVEMHHESLPEAVPGDNVGFNVKNVSVKD 319
>U51994-9|AAO21383.1| 267|Caenorhabditis elegans Elongation factor
protein 4, isoformc protein.
Length = 267
Score = 140 bits (340), Expect = 6e-34
Identities = 89/171 (52%), Positives = 101/171 (59%)
Frame = +1
Query: 1 RDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKM 180
RDFIKNMITGTSQADCAVL+VA GTGEFEAGISKNGQTREHALLA TLGVKQL V+
Sbjct: 96 RDFIKNMITGTSQADCAVLVVACGTGEFEAGISKNGQTREHALLAQTLGVKQL---VSLR 152
Query: 181 DSTEPPYSEPRFEEIKKEVSSYIKKLATTQLLSLSCPFLDGTETTCWSLQPKCLGSRDGR 360
T P S R + I++ L LS D TETTC C GSRDG
Sbjct: 153 SPTRSPDSSRRSDTIQR-------------LFHLS-QSPDSTETTCLRSPRTCHGSRDGL 198
Query: 361 WSVKKAKLTENASLKLSMPSCHLPAPLTSPCVFPCKTYTKSVVLVPCPSEI 513
+ +K L E S +L PS H A LT VF + T+S L P S++
Sbjct: 199 LNARKETLPERPSSRLLTPSSHHNAQLTDHSVFHSRMCTRSEELEPSQSDV 249
>Z81098-7|CAI79193.2| 592|Caenorhabditis elegans Hypothetical
protein K07A12.4b protein.
Length = 592
Score = 103 bits (247), Expect = 1e-22
Identities = 50/87 (57%), Positives = 65/87 (74%)
Frame = +1
Query: 1 RDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKM 180
+DFI NMITGTSQAD A+L+V A TGEFE G GQT+EHALL +LGV QLIV VNK+
Sbjct: 259 KDFISNMITGTSQADAAILVVNATTGEFETGFENGGQTKEHALLLRSLGVTQLIVAVNKL 318
Query: 181 DSTEPPYSEPRFEEIKKEVSSYIKKLA 261
D+ + +S+ RF+EIK +S ++ + A
Sbjct: 319 DTVD--WSQDRFDEIKNNLSVFLTRQA 343
Score = 49.6 bits (113), Expect = 2e-06
Identities = 27/95 (28%), Positives = 52/95 (54%)
Frame = +3
Query: 234 SILIHQEIGYNPAAVAFVPISGWHGDNMLEPSTKMPWFKGWQVERKEGKADGKCLIEALD 413
S+ + ++ G++ FVP+SG+ G+N+++ ++ W+ DG CL+E +D
Sbjct: 336 SVFLTRQAGFSKPK--FVPVSGFTGENLIK-RMELDWY------------DGPCLLELID 380
Query: 414 AILPPARPTDKPLRLPLQDVYKIGGIGTVPVGDLK 518
+ + P P+D PLR+ + DV K+ V G ++
Sbjct: 381 SFVAPQPPSDGPLRIGISDVLKVASNQLVVSGKIE 415
>Z81098-6|CAB03180.3| 610|Caenorhabditis elegans Hypothetical
protein K07A12.4a protein.
Length = 610
Score = 103 bits (247), Expect = 1e-22
Identities = 50/87 (57%), Positives = 65/87 (74%)
Frame = +1
Query: 1 RDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKM 180
+DFI NMITGTSQAD A+L+V A TGEFE G GQT+EHALL +LGV QLIV VNK+
Sbjct: 277 KDFISNMITGTSQADAAILVVNATTGEFETGFENGGQTKEHALLLRSLGVTQLIVAVNKL 336
Query: 181 DSTEPPYSEPRFEEIKKEVSSYIKKLA 261
D+ + +S+ RF+EIK +S ++ + A
Sbjct: 337 DTVD--WSQDRFDEIKNNLSVFLTRQA 361
Score = 49.6 bits (113), Expect = 2e-06
Identities = 27/95 (28%), Positives = 52/95 (54%)
Frame = +3
Query: 234 SILIHQEIGYNPAAVAFVPISGWHGDNMLEPSTKMPWFKGWQVERKEGKADGKCLIEALD 413
S+ + ++ G++ FVP+SG+ G+N+++ ++ W+ DG CL+E +D
Sbjct: 354 SVFLTRQAGFSKPK--FVPVSGFTGENLIK-RMELDWY------------DGPCLLELID 398
Query: 414 AILPPARPTDKPLRLPLQDVYKIGGIGTVPVGDLK 518
+ + P P+D PLR+ + DV K+ V G ++
Sbjct: 399 SFVAPQPPSDGPLRIGISDVLKVASNQLVVSGKIE 433
>Z92835-1|CAB07395.2| 532|Caenorhabditis elegans Hypothetical
protein H19N07.1 protein.
Length = 532
Score = 95.1 bits (226), Expect = 4e-20
Identities = 45/104 (43%), Positives = 67/104 (64%), Gaps = 3/104 (2%)
Frame = +1
Query: 1 RDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKM 180
+ F+ NMI G +QAD AVL+++A GEFE G + GQTREH++L T GVK L++ VNKM
Sbjct: 198 KSFVPNMIVGANQADLAVLVISARRGEFETGFDRGGQTREHSMLVKTAGVKHLVILVNKM 257
Query: 181 DSTEPPYSEPRFEEIKKEVSSYIKKLA---TTQLLSLSCPFLDG 303
D + E RF+EI+ +++ +++KL T + + C L G
Sbjct: 258 DDPTVKWEEERFKEIEGKLTPFLRKLGFNPKTDITYVPCSGLTG 301
Score = 31.1 bits (67), Expect = 0.75
Identities = 26/95 (27%), Positives = 44/95 (46%), Gaps = 2/95 (2%)
Frame = +3
Query: 249 QEIGYNPAA-VAFVPISGWHGDNMLEPSTKMPWFKGWQVERKEGKADGKCLIEALDAILP 425
+++G+NP + +VP SG G + + T W G C IE +D +LP
Sbjct: 281 RKLGFNPKTDITYVPCSGLTGAFIKDRPTGSEG--NWY--------SGPCFIEFIDVLLP 330
Query: 426 P-ARPTDKPLRLPLQDVYKIGGIGTVPVGDLKLVC 527
R + P+R + + Y +GTV +G ++ C
Sbjct: 331 SYKRDFNGPVRCTVAEKY--SEMGTVIIGKMESGC 363
Score = 28.7 bits (61), Expect = 4.0
Identities = 13/54 (24%), Positives = 24/54 (44%)
Frame = +2
Query: 509 RFETGVLKPGTIVVFSPANITTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKE 670
+ E+G ++ G +V P +V + + V GDN+ F +K + E
Sbjct: 358 KMESGCVQKGDTLVVMPNKQPVQVLQIWADDVETERVVAGDNIKFKLKGIEENE 411
>U80437-9|AAN84843.1| 439|Caenorhabditis elegans Tu elongation
factor (ef-tu), mitochondrialprotein 2 protein.
Length = 439
Score = 59.3 bits (137), Expect = 2e-09
Identities = 32/63 (50%), Positives = 40/63 (63%)
Frame = +1
Query: 4 DFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMD 183
DFIKNMI GTSQ D AVL++AA G E QT+EH +LA +GVK + + +NK D
Sbjct: 120 DFIKNMICGTSQMDVAVLVIAATDGVME-------QTKEHLILAKQVGVKNMAIFINKAD 172
Query: 184 STE 192
E
Sbjct: 173 LVE 175
Score = 29.5 bits (63), Expect = 2.3
Identities = 22/63 (34%), Positives = 31/63 (49%), Gaps = 3/63 (4%)
Frame = +3
Query: 339 PWFKGWQVERKEGKADGKC---LIEALDAILPPARPTDKPLRLPLQDVYKIGGIGTVPVG 509
P +G + EG+ D C LI+ALD++ P R +P+ I G GTV VG
Sbjct: 201 PVIRGSALSALEGQ-DISCIERLIDALDSLPEPDRNEKDTFVMPIASKTAITGRGTVIVG 259
Query: 510 DLK 518
L+
Sbjct: 260 TLE 262
>AB010028-1|BAA31345.1| 439|Caenorhabditis elegans mitochondrial
elongation factorTu homologue protein.
Length = 439
Score = 59.3 bits (137), Expect = 2e-09
Identities = 32/63 (50%), Positives = 40/63 (63%)
Frame = +1
Query: 4 DFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMD 183
DFIKNMI GTSQ D AVL++AA G E QT+EH +LA +GVK + + +NK D
Sbjct: 120 DFIKNMICGTSQMDVAVLVIAATDGVME-------QTKEHLILAKQVGVKNMAIFINKAD 172
Query: 184 STE 192
E
Sbjct: 173 LVE 175
Score = 29.5 bits (63), Expect = 2.3
Identities = 22/63 (34%), Positives = 31/63 (49%), Gaps = 3/63 (4%)
Frame = +3
Query: 339 PWFKGWQVERKEGKADGKC---LIEALDAILPPARPTDKPLRLPLQDVYKIGGIGTVPVG 509
P +G + EG+ D C LI+ALD++ P R +P+ I G GTV VG
Sbjct: 201 PVIRGSALSALEGQ-DISCIERLIDALDSLPEPDRNEKDTFVMPIASKTAITGRGTVIVG 259
Query: 510 DLK 518
L+
Sbjct: 260 TLE 262
>D38472-1|BAA07492.1| 495|Caenorhabditis elegans elongation factor
Tu homologueprecursor protein.
Length = 495
Score = 49.6 bits (113), Expect = 2e-06
Identities = 33/72 (45%), Positives = 44/72 (61%), Gaps = 2/72 (2%)
Frame = +1
Query: 4 DFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGV--KQLIVGVNK 177
D+IKNMITG +Q + A+L+VAA G QTREH LLA +GV ++V +NK
Sbjct: 124 DYIKNMITGAAQMEGAILVVAATDGPMP-------QTREHLLLARQVGVPLDNIVVFMNK 176
Query: 178 MDSTEPPYSEPR 213
+D E P +E R
Sbjct: 177 VD--EVPDAETR 186
>D38471-1|BAA07491.1| 496|Caenorhabditis elegans elongation factor
Tu homologueprecursor protein.
Length = 496
Score = 49.6 bits (113), Expect = 2e-06
Identities = 33/72 (45%), Positives = 44/72 (61%), Gaps = 2/72 (2%)
Frame = +1
Query: 4 DFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGV--KQLIVGVNK 177
D+IKNMITG +Q + A+L+VAA G QTREH LLA +GV ++V +NK
Sbjct: 125 DYIKNMITGAAQMEGAILVVAATDGPMP-------QTREHLLLARQVGVPLDNIVVFMNK 177
Query: 178 MDSTEPPYSEPR 213
+D E P +E R
Sbjct: 178 VD--EVPDAETR 187
>AC024859-25|AAK29979.1| 496|Caenorhabditis elegans Tu elongation
factor (ef-tu), mitochondrialprotein 1 protein.
Length = 496
Score = 49.6 bits (113), Expect = 2e-06
Identities = 33/72 (45%), Positives = 44/72 (61%), Gaps = 2/72 (2%)
Frame = +1
Query: 4 DFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGV--KQLIVGVNK 177
D+IKNMITG +Q + A+L+VAA G QTREH LLA +GV ++V +NK
Sbjct: 125 DYIKNMITGAAQMEGAILVVAATDGPMP-------QTREHLLLARQVGVPLDNIVVFMNK 177
Query: 178 MDSTEPPYSEPR 213
+D E P +E R
Sbjct: 178 VD--EVPDAETR 187
>AC024817-55|AAF59563.3| 366|Caenorhabditis elegans Hypothetical
protein Y54G2A.28 protein.
Length = 366
Score = 33.5 bits (73), Expect = 0.14
Identities = 18/43 (41%), Positives = 24/43 (55%)
Frame = -2
Query: 176 LFTPTMSCLTPRVKASKACSRV*PFLEIPASNSPVPAATMSTA 48
LF PT+SC+ + AS S P + PA N VP AT+S +
Sbjct: 13 LFDPTLSCMATQNSASATLSCANPTVAAPA-NDDVPEATLSVS 54
>AF039711-8|ABS19466.1| 766|Caenorhabditis elegans Hypothetical
protein F49D11.10 protein.
Length = 766
Score = 30.7 bits (66), Expect = 0.99
Identities = 16/42 (38%), Positives = 21/42 (50%)
Frame = +2
Query: 530 KPGTIVVFSPANITTEVKSVEMHHEALQEAVPGDNVGFNVKN 655
KPGTI F P ITTE K H L+ + GD +++
Sbjct: 360 KPGTIQWFDPVTITTESKM----HVTLENTIDGDMTSRGIRS 397
>U32275-1|AAA75370.1| 982|Caenorhabditis elegans serine-threonine
kinase protein.
Length = 982
Score = 29.5 bits (63), Expect = 2.3
Identities = 18/62 (29%), Positives = 32/62 (51%)
Frame = +1
Query: 163 VGVNKMDSTEPPYSEPRFEEIKKEVSSYIKKLATTQLLSLSCPFLDGTETTCWSLQPKCL 342
V + KM+ + E ++ +I KEVS ++ + ++ FL +TTCW + C+
Sbjct: 56 VAIKKMNFSGKQAVE-KWNDILKEVS-FLNTVVHPHIVDYKACFLK--DTTCWLVMEYCI 111
Query: 343 GS 348
GS
Sbjct: 112 GS 113
>U11280-5|AAA19437.1| 982|Caenorhabditis elegans Protein kinase
protein 18, isoforma protein.
Length = 982
Score = 29.5 bits (63), Expect = 2.3
Identities = 18/62 (29%), Positives = 32/62 (51%)
Frame = +1
Query: 163 VGVNKMDSTEPPYSEPRFEEIKKEVSSYIKKLATTQLLSLSCPFLDGTETTCWSLQPKCL 342
V + KM+ + E ++ +I KEVS ++ + ++ FL +TTCW + C+
Sbjct: 56 VAIKKMNFSGKQAVE-KWNDILKEVS-FLNTVVHPHIVDYKACFLK--DTTCWLVMEYCI 111
Query: 343 GS 348
GS
Sbjct: 112 GS 113
>U11280-4|AAM97951.2| 353|Caenorhabditis elegans Protein kinase
protein 18, isoformb protein.
Length = 353
Score = 29.5 bits (63), Expect = 2.3
Identities = 18/62 (29%), Positives = 32/62 (51%)
Frame = +1
Query: 163 VGVNKMDSTEPPYSEPRFEEIKKEVSSYIKKLATTQLLSLSCPFLDGTETTCWSLQPKCL 342
V + KM+ + E ++ +I KEVS ++ + ++ FL +TTCW + C+
Sbjct: 56 VAIKKMNFSGKQAVE-KWNDILKEVS-FLNTVVHPHIVDYKACFLK--DTTCWLVMEYCI 111
Query: 343 GS 348
GS
Sbjct: 112 GS 113
>Z99709-7|CAB16862.2| 500|Caenorhabditis elegans Hypothetical
protein C47B2.7b protein.
Length = 500
Score = 28.7 bits (61), Expect = 4.0
Identities = 21/78 (26%), Positives = 39/78 (50%)
Frame = +1
Query: 10 IKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDST 189
I+ ++ ++ D A++I+ + AGI QT EH LLA ++I+ +NK D
Sbjct: 86 IRAVLAASTVFDMAIVII-----DVVAGIQP--QTAEHLLLASKFCPNRVIIVLNKCDLA 138
Query: 190 EPPYSEPRFEEIKKEVSS 243
E ++++K + S
Sbjct: 139 EKSKISESAKKVRKGLKS 156
>Z14092-9|CAA78474.1| 1429|Caenorhabditis elegans Hypothetical
protein R107.8 protein.
Length = 1429
Score = 28.3 bits (60), Expect = 5.3
Identities = 24/83 (28%), Positives = 33/83 (39%), Gaps = 1/83 (1%)
Frame = -3
Query: 601 VVHLHRFDFSSDVGGGKDNNGTWFQHTSFKSPTGTVPIPPI-LYTSCRGRRRGLSVGRAG 425
V H HR FS D G NG Q F+ T + + +GR+ S G +G
Sbjct: 557 VCHQHRESFSCDCPPGFYGNGCE-QEKMFRCLKSTCQNGGVCINEEEKGRKCECSYGFSG 615
Query: 424 GRMASRASMRHFPSALPSLRSTC 356
R + ++ F LRS C
Sbjct: 616 ARCEEKINLTGFTEKDSLLRSVC 638
>M12069-1|AAA70191.1| 1429|Caenorhabditis elegans protein (
C.elegans homeotic lin-12 protein gene, complete cds. ).
Length = 1429
Score = 28.3 bits (60), Expect = 5.3
Identities = 24/83 (28%), Positives = 33/83 (39%), Gaps = 1/83 (1%)
Frame = -3
Query: 601 VVHLHRFDFSSDVGGGKDNNGTWFQHTSFKSPTGTVPIPPI-LYTSCRGRRRGLSVGRAG 425
V H HR FS D G NG Q F+ T + + +GR+ S G +G
Sbjct: 557 VCHQHRESFSCDCPPGFYGNGCE-QEKMFRCLKSTCQNGGVCINEEEKGRKCECSYGFSG 615
Query: 424 GRMASRASMRHFPSALPSLRSTC 356
R + ++ F LRS C
Sbjct: 616 ARCEEKINLTGFTEKDSLLRSVC 638
>U88315-18|ABO16437.1| 99|Caenorhabditis elegans Hypothetical
protein C37H5.13c protein.
Length = 99
Score = 27.9 bits (59), Expect = 6.9
Identities = 16/55 (29%), Positives = 26/55 (47%)
Frame = -2
Query: 338 HFG*RLQHVVSVPSRNGHESDSSWVVANFLMYEDTSFLISSNLGSLYGGSVESIL 174
HF R QHV S PSR+ D + V ++ T ++S + G +++ L
Sbjct: 18 HFAHRPQHVSSAPSRSMEIDDQNGVQHYPMLLNVTHIDMTSRADDIRAGLIDTFL 72
>U88315-17|AAK68238.1| 132|Caenorhabditis elegans Hypothetical
protein C37H5.13b protein.
Length = 132
Score = 27.9 bits (59), Expect = 6.9
Identities = 16/55 (29%), Positives = 26/55 (47%)
Frame = -2
Query: 338 HFG*RLQHVVSVPSRNGHESDSSWVVANFLMYEDTSFLISSNLGSLYGGSVESIL 174
HF R QHV S PSR+ D + V ++ T ++S + G +++ L
Sbjct: 51 HFAHRPQHVSSAPSRSMEIDDQNGVQHYPMLLNVTHIDMTSRADDIRAGLIDTFL 105
>U88315-16|AAK68237.1| 414|Caenorhabditis elegans Hypothetical
protein C37H5.13a protein.
Length = 414
Score = 27.9 bits (59), Expect = 6.9
Identities = 16/55 (29%), Positives = 26/55 (47%)
Frame = -2
Query: 338 HFG*RLQHVVSVPSRNGHESDSSWVVANFLMYEDTSFLISSNLGSLYGGSVESIL 174
HF R QHV S PSR+ D + V ++ T ++S + G +++ L
Sbjct: 51 HFAHRPQHVSSAPSRSMEIDDQNGVQHYPMLLNVTHIDMTSRADDIRAGLIDTFL 105
>U42834-3|AAA83583.2| 860|Caenorhabditis elegans Hypothetical
protein F28B4.2 protein.
Length = 860
Score = 27.9 bits (59), Expect = 6.9
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = -3
Query: 574 SSDVGGGKDNNGTWFQHTSFKSPTGTVPIPPI 479
+S+ G + NGTW QH+ S + IP I
Sbjct: 540 TSEDSGSHNGNGTWHQHSHSYSSSTNSQIPSI 571
>AL132862-18|CAB70230.2| 481|Caenorhabditis elegans Hypothetical
protein Y73F8A.24 protein.
Length = 481
Score = 27.9 bits (59), Expect = 6.9
Identities = 26/96 (27%), Positives = 43/96 (44%), Gaps = 7/96 (7%)
Frame = -3
Query: 616 FLESFVVHLHRFDFSSDVGGGKDNNGTWFQHTSFKSPTGTVPIPPI----LYTSCRGRRR 449
FL + HL + DV K +NG T+F+ T + + L+T R +
Sbjct: 283 FLTQLLTHLATNETIDDVSAEKVSNGKVIVETNFRVYAYTSSLLQLAIIALFTEMTYRFQ 342
Query: 448 GLSVGRAGGRMASRASMRHFPSA---LPSLRSTCHP 350
+SVG R + R +++H +A + LR+ HP
Sbjct: 343 DMSVGMI-TRESVRGALQHGITAAQIISFLRANAHP 377
>Z69661-2|CAA93494.1| 925|Caenorhabditis elegans Hypothetical
protein F48F7.4 protein.
Length = 925
Score = 27.5 bits (58), Expect = 9.2
Identities = 18/45 (40%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Frame = -2
Query: 260 ANFLMYEDTSFLISSNLGSLYGGSVESILFTPTMSCL-TPRVKAS 129
+NFL+ FL S+N L S+ S TP CL PR +AS
Sbjct: 14 SNFLLLSSILFLFSTNSHLLLTISLSSSSSTPMCFCLQRPRRRAS 58
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,278,943
Number of Sequences: 27780
Number of extensions: 403756
Number of successful extensions: 1307
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 1216
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1294
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1518563232
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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