Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30075
(750 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC576.11 |rpl15||60S ribosomal protein L15|Schizosaccharomyces... 114 1e-26
SPAC1783.08c |rpl1502|rpl15-2|60S ribosomal protein L15b|Schizos... 114 1e-26
SPBP35G2.06c |nup131|Nup133a|nucleoporin Nup131|Schizosaccharomy... 29 0.94
SPAC23H3.15c ||SPAC25H1.01c|sequence orphan|Schizosaccharomyces ... 27 2.9
SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated protei... 27 3.8
SPAC23C11.01 |||ER membrane protein, ICE2 family|Schizosaccharom... 27 3.8
SPBC21B10.10 |rps402|rps4-2|40S ribosomal protein S4|Schizosacch... 26 6.6
>SPCC576.11 |rpl15||60S ribosomal protein L15|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 201
Score = 114 bits (274), Expect = 1e-26
Identities = 53/85 (62%), Positives = 60/85 (70%)
Frame = +3
Query: 255 VAKGATYGKPKSHGVNQLKPTRNLQSIAEEXXXXXXXXXXXXSSYWVAQDSSYKYFEVIL 434
V KG TYGKP GVN LK R+ + AEE +SYWV QD++YK+FEVIL
Sbjct: 75 VPKGQTYGKPVHQGVNHLKYQRSARCTAEERVGRYCSNLRVLNSYWVNQDATYKFFEVIL 134
Query: 435 VDPSHKAIRRDPKINWIVNAVHKHR 509
VDPSHKAIRRDP+INWIVN VHKHR
Sbjct: 135 VDPSHKAIRRDPRINWIVNPVHKHR 159
Score = 99.1 bits (236), Expect = 6e-22
Identities = 42/62 (67%), Positives = 53/62 (85%)
Frame = +1
Query: 34 MGAYRYIQELYRKKLSDVMRFLLRVRVWQYRQLTRMHRAPRPTRPDKARRLGYRAKQGYV 213
MGAY+Y++EL +KK SDV FL RVR W+YRQ+ +HRA RP+RPDKARRLGY+AKQGYV
Sbjct: 1 MGAYKYLEELAKKKQSDVNLFLSRVRAWEYRQMNVIHRASRPSRPDKARRLGYKAKQGYV 60
Query: 214 VF 219
++
Sbjct: 61 IY 62
Score = 55.6 bits (128), Expect = 7e-09
Identities = 26/45 (57%), Positives = 32/45 (71%)
Frame = +2
Query: 509 EMRGLTSAGRSSRGLGKGHRYSQTKGGSRRAAWLRRNTLQLRRKR 643
E RGLTS G+ SRG+GKGHR++ + + A WLR NTL LRR R
Sbjct: 160 ESRGLTSIGKKSRGIGKGHRFNNS---PQHATWLRHNTLSLRRYR 201
>SPAC1783.08c |rpl1502|rpl15-2|60S ribosomal protein
L15b|Schizosaccharomyces pombe|chr 1|||Manual
Length = 201
Score = 114 bits (274), Expect = 1e-26
Identities = 53/85 (62%), Positives = 60/85 (70%)
Frame = +3
Query: 255 VAKGATYGKPKSHGVNQLKPTRNLQSIAEEXXXXXXXXXXXXSSYWVAQDSSYKYFEVIL 434
V KG TYGKP GVN LK R+ + AEE +SYWV QD++YK+FEVIL
Sbjct: 75 VPKGQTYGKPVHQGVNHLKYQRSARCTAEERVGRYCSNLRVLNSYWVNQDATYKFFEVIL 134
Query: 435 VDPSHKAIRRDPKINWIVNAVHKHR 509
VDPSHKAIRRDP+INWIVN VHKHR
Sbjct: 135 VDPSHKAIRRDPRINWIVNPVHKHR 159
Score = 99.1 bits (236), Expect = 6e-22
Identities = 42/62 (67%), Positives = 53/62 (85%)
Frame = +1
Query: 34 MGAYRYIQELYRKKLSDVMRFLLRVRVWQYRQLTRMHRAPRPTRPDKARRLGYRAKQGYV 213
MGAY+Y++EL +KK SDV FL RVR W+YRQ+ +HRA RP+RPDKARRLGY+AKQGYV
Sbjct: 1 MGAYKYLEELAKKKQSDVNLFLSRVRAWEYRQMNVIHRASRPSRPDKARRLGYKAKQGYV 60
Query: 214 VF 219
++
Sbjct: 61 IY 62
Score = 57.2 bits (132), Expect = 2e-09
Identities = 27/45 (60%), Positives = 32/45 (71%)
Frame = +2
Query: 509 EMRGLTSAGRSSRGLGKGHRYSQTKGGSRRAAWLRRNTLQLRRKR 643
E RGLTS G+ SRG+GKGHRY+ + + A WLR NTL LRR R
Sbjct: 160 ESRGLTSIGKKSRGIGKGHRYNNS---PQHATWLRHNTLSLRRYR 201
>SPBP35G2.06c |nup131|Nup133a|nucleoporin Nup131|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1142
Score = 28.7 bits (61), Expect = 0.94
Identities = 14/38 (36%), Positives = 22/38 (57%)
Frame = +1
Query: 394 LHKILHTSISRLSSWTRHTRPFVAILRSTGS*MLYISI 507
L+KIL S ++ ++T H P V ++ S LYIS+
Sbjct: 47 LYKILQISAPKVGNFTIHDAPVVGLIDSILEYYLYISV 84
>SPAC23H3.15c ||SPAC25H1.01c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 325
Score = 27.1 bits (57), Expect = 2.9
Identities = 18/41 (43%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
Frame = +2
Query: 503 ASEMRG-LTSAGRSSRGLGKG-HRYSQTKGGSRRAAWLRRN 619
A++ RG ++SAG S G GKG + T +RRAA RN
Sbjct: 229 ANKTRGAVSSAGYSGEGYGKGTYATDTTAEANRRAATGTRN 269
>SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1462
Score = 26.6 bits (56), Expect = 3.8
Identities = 12/35 (34%), Positives = 17/35 (48%)
Frame = +3
Query: 399 QDSSYKYFEVILVDPSHKAIRRDPKINWIVNAVHK 503
+ S KY E P H + PK WI++ +HK
Sbjct: 1182 KSESNKYQEQAYSTPLHHTLNVLPKNKWILSRMHK 1216
>SPAC23C11.01 |||ER membrane protein, ICE2
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 441
Score = 26.6 bits (56), Expect = 3.8
Identities = 11/34 (32%), Positives = 20/34 (58%), Gaps = 5/34 (14%)
Frame = -2
Query: 572 SIYVPCRDLG-----SCDQPKSDHASPMLMYSIH 486
++Y+ C D G S ++PK D+ P ++ S+H
Sbjct: 262 TVYMVCTDFGNPNTSSLEKPKFDYLPPNILQSVH 295
>SPBC21B10.10 |rps402|rps4-2|40S ribosomal protein
S4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 262
Score = 25.8 bits (54), Expect = 6.6
Identities = 19/46 (41%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
Frame = +2
Query: 473 DQLDRECCT*ASEMRGLTSAGRS--SRGLGKGHRYSQTKGGSRRAA 604
D LDRE T S + + AG+S S GKG + S T+ RR A
Sbjct: 212 DALDREFATRLSNVFVIGEAGKSWISLPKGKGVKLSITEERDRRRA 257
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,039,925
Number of Sequences: 5004
Number of extensions: 59906
Number of successful extensions: 156
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 149
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 154
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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