Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30075
(750 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_03_0257 + 11145558-11145876,11148181-11148347,11149114-111493... 106 2e-23
03_05_0228 - 22137771-22138016,22138109-22138306,22138852-221390... 106 2e-23
06_02_0082 + 11536799-11537554,11538210-11538334,11538507-11538687 33 1e-04
06_03_0191 - 17720512-17721435,17721718-17721843,17721940-177221... 31 1.3
01_06_1709 + 39337720-39337785,39338103-39338310,39338705-39339345 30 1.7
12_02_1111 - 26157796-26160330 30 2.3
05_02_0037 + 5883285-5884292 30 2.3
01_01_0652 + 4975091-4975585 29 3.0
09_02_0328 - 7293547-7293855,7294161-7294274,7294348-7294429,729... 29 5.2
08_02_0592 + 19064025-19066596,19067036-19067084,19068530-190686... 28 9.1
02_05_1139 - 34381575-34381878,34382181-34382865,34383479-34383881 28 9.1
>05_03_0257 +
11145558-11145876,11148181-11148347,11149114-11149311,
11149405-11149650
Length = 309
Score = 106 bits (254), Expect = 2e-23
Identities = 47/85 (55%), Positives = 57/85 (67%)
Frame = +3
Query: 255 VAKGATYGKPKSHGVNQLKPTRNLQSIAEEXXXXXXXXXXXXSSYWVAQDSSYKYFEVIL 434
V KG YGKPK G+ QLK RN +S+AEE +SYWV +DS+YKYFE+IL
Sbjct: 180 VPKGIVYGKPKHQGITQLKFQRNKRSVAEERAGRKLGGLRVLNSYWVNEDSTYKYFEIIL 239
Query: 435 VDPSHKAIRRDPKINWIVNAVHKHR 509
VD +H AIR DP+INW+ VHKHR
Sbjct: 240 VDVAHSAIRNDPRINWLCKPVHKHR 264
Score = 96.7 bits (230), Expect = 2e-20
Identities = 42/61 (68%), Positives = 51/61 (83%)
Frame = +1
Query: 37 GAYRYIQELYRKKLSDVMRFLLRVRVWQYRQLTRMHRAPRPTRPDKARRLGYRAKQGYVV 216
GAY+Y+ EL+R+K SDVMRF+ RVR W+YRQ + R RPTRPDKARRLGY+AKQGYVV
Sbjct: 107 GAYKYVSELWRRKQSDVMRFVQRVRCWEYRQQPAIVRLTRPTRPDKARRLGYKAKQGYVV 166
Query: 217 F 219
+
Sbjct: 167 Y 167
Score = 50.4 bits (115), Expect = 1e-06
Identities = 26/46 (56%), Positives = 32/46 (69%), Gaps = 1/46 (2%)
Frame = +2
Query: 509 EMRGLTSAGRSSRGL-GKGHRYSQTKGGSRRAAWLRRNTLQLRRKR 643
E+RGLTSAG+ RGL GKGH + + + SRRA W R T+ LRR R
Sbjct: 265 ELRGLTSAGKKYRGLRGKGHTHHKAR-PSRRATWKRNQTVSLRRYR 309
>03_05_0228 -
22137771-22138016,22138109-22138306,22138852-22139018,
22139129-22139132
Length = 204
Score = 106 bits (254), Expect = 2e-23
Identities = 47/85 (55%), Positives = 57/85 (67%)
Frame = +3
Query: 255 VAKGATYGKPKSHGVNQLKPTRNLQSIAEEXXXXXXXXXXXXSSYWVAQDSSYKYFEVIL 434
V KG YGKPK G+ QLK RN +S+AEE +SYWV +DS+YKYFE+IL
Sbjct: 75 VPKGIVYGKPKHQGITQLKFQRNKRSVAEERAGRKLGGLRVLNSYWVNEDSTYKYFEIIL 134
Query: 435 VDPSHKAIRRDPKINWIVNAVHKHR 509
VD +H AIR DP+INW+ VHKHR
Sbjct: 135 VDVAHSAIRNDPRINWLCKPVHKHR 159
Score = 98.7 bits (235), Expect = 4e-21
Identities = 43/62 (69%), Positives = 52/62 (83%)
Frame = +1
Query: 34 MGAYRYIQELYRKKLSDVMRFLLRVRVWQYRQLTRMHRAPRPTRPDKARRLGYRAKQGYV 213
MGAY+Y+ EL+R+K SDVMRF+ RVR W+YRQ + R RPTRPDKARRLGY+AKQGYV
Sbjct: 1 MGAYKYVSELWRRKQSDVMRFVQRVRCWEYRQQPAIVRLTRPTRPDKARRLGYKAKQGYV 60
Query: 214 VF 219
V+
Sbjct: 61 VY 62
Score = 50.4 bits (115), Expect = 1e-06
Identities = 26/46 (56%), Positives = 32/46 (69%), Gaps = 1/46 (2%)
Frame = +2
Query: 509 EMRGLTSAGRSSRGL-GKGHRYSQTKGGSRRAAWLRRNTLQLRRKR 643
E+RGLTSAG+ RGL GKGH + + + SRRA W R T+ LRR R
Sbjct: 160 ELRGLTSAGKKYRGLRGKGHTHHKAR-PSRRATWKRNQTVSLRRYR 204
>06_02_0082 + 11536799-11537554,11538210-11538334,11538507-11538687
Length = 353
Score = 33.5 bits (73), Expect(2) = 1e-04
Identities = 16/31 (51%), Positives = 20/31 (64%)
Frame = +3
Query: 420 FEVILVDPSHKAIRRDPKINWIVNAVHKHRR 512
FE+ILVD +H AIR DPK + A + RR
Sbjct: 299 FEIILVDVAHSAIRDDPKDQLALQACAQARR 329
Score = 29.9 bits (64), Expect(2) = 1e-04
Identities = 13/23 (56%), Positives = 14/23 (60%)
Frame = +3
Query: 255 VAKGATYGKPKSHGVNQLKPTRN 323
V KG Y KPK G+ QLK RN
Sbjct: 270 VHKGIVYSKPKHQGITQLKFQRN 292
>06_03_0191 - 17720512-17721435,17721718-17721843,17721940-17722140,
17722189-17722332,17722415-17722722,17723433-17723568,
17723748-17723841,17723976-17724073,17724951-17725004,
17725704-17726150,17726227-17726393,17726540-17726663,
17726751-17726837,17727000-17727056,17727492-17727560,
17727664-17727811,17727893-17728116,17728842-17728958,
17729649-17729742,17730573-17730640,17733278-17733334,
17733412-17733511,17733638-17733674,17734077-17734200,
17735254-17735322,17735371-17735410,17735905-17735993,
17736849-17736953,17737033-17737104,17737814-17737936,
17738049-17738117,17738966-17739059,17739145-17739231,
17740184-17740351,17740436-17740552,17741484-17741590,
17741671-17741803,17742564-17742667,17743504-17743629,
17744148-17744216,17744996-17745064,17745278-17745358,
17745444-17745533,17745896-17746000,17747803-17747873,
17748320-17748461,17749266-17749330,17750081-17750168,
17750236-17750325,17750437-17750673,17751064-17751170,
17751625-17751832,17752376-17752546
Length = 2366
Score = 30.7 bits (66), Expect = 1.3
Identities = 16/65 (24%), Positives = 33/65 (50%)
Frame = -3
Query: 703 SICIQK*ANGKSLTVLDRCLSFAT*LKSVASEPSCPA*ASLCLRVSMSLAETSGAATSRS 524
++ +Q ++ S++V+D CL S+A CP A++ L ++ + S +AT
Sbjct: 1958 TLFLQGCSSKDSVSVIDECLKLLFLFHSLAQSKKCPQEATMLLLDALLMVFYSSSATGSQ 2017
Query: 523 QTTHL 509
+ T +
Sbjct: 2018 ELTEV 2022
>01_06_1709 + 39337720-39337785,39338103-39338310,39338705-39339345
Length = 304
Score = 30.3 bits (65), Expect = 1.7
Identities = 14/41 (34%), Positives = 19/41 (46%)
Frame = +2
Query: 515 RGLTSAGRSSRGLGKGHRYSQTKGGSRRAAWLRRNTLQLRR 637
+ L GR + G G + +GG RR AW RR + R
Sbjct: 136 KALVGVGRRAAGAGLQAVVPEARGGERRRAWRRRGLVATLR 176
>12_02_1111 - 26157796-26160330
Length = 844
Score = 29.9 bits (64), Expect = 2.3
Identities = 10/26 (38%), Positives = 19/26 (73%)
Frame = +2
Query: 215 YSESVCDVVAASVRC*GCHLWQAQEP 292
Y++ VC+V+ +VR G + W+A++P
Sbjct: 480 YAQLVCEVILPAVRISGTNSWEARDP 505
>05_02_0037 + 5883285-5884292
Length = 335
Score = 29.9 bits (64), Expect = 2.3
Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 3/53 (5%)
Frame = +3
Query: 117 AVPSVDSYAPRSQAHKAGQSPKTRLP---C*TRLCCIQNPCATWWPQASVAKG 266
AV ++ AP ++ +A +SP C R CC +P + WWP+ G
Sbjct: 271 AVFPTEAAAPATEGKEAAKSPDAAAQGGWCLFR-CCWPSPPSVWWPRCGCGGG 322
>01_01_0652 + 4975091-4975585
Length = 164
Score = 29.5 bits (63), Expect = 3.0
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = +2
Query: 527 SAGRSSRGLGKGHRYSQTKGGSRRAAW 607
+AG+ GKG R + +GG RR W
Sbjct: 37 AAGKRREAAGKGGRQREARGGGRRMRW 63
>09_02_0328 -
7293547-7293855,7294161-7294274,7294348-7294429,
7295318-7295401,7296199-7296399,7296516-7296853,
7296968-7297084
Length = 414
Score = 28.7 bits (61), Expect = 5.2
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = +2
Query: 503 ASEMRGLTSAGRSSRGLGKGHRYSQTKGGSRRAA 604
A+ G++ +G G G+G KGGSR AA
Sbjct: 169 AARPAGVSGSGAGGGGRGRGRGSDDAKGGSRAAA 202
>08_02_0592 +
19064025-19066596,19067036-19067084,19068530-19068605,
19068767-19068922
Length = 950
Score = 27.9 bits (59), Expect = 9.1
Identities = 13/43 (30%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
Frame = +2
Query: 212 LYSESVCDVVAASVRC*GCHLWQAQEPWCQ-PVEAHAQPSIHC 337
+Y+ + DVV +C G A EPW + P + H + C
Sbjct: 517 IYASAAADVVKVMNKCKGTKSKAAAEPWAEGPSKEHFKAKREC 559
>02_05_1139 - 34381575-34381878,34382181-34382865,34383479-34383881
Length = 463
Score = 27.9 bits (59), Expect = 9.1
Identities = 19/65 (29%), Positives = 30/65 (46%), Gaps = 2/65 (3%)
Frame = +3
Query: 99 VACEGMAVPSVDSYAPRSQAHKAGQSPKTRLPC*TRLCCIQNPCATWWPQASVAKG--AT 272
+ C G+ +P+ + AP S + G+ P+ P R C P +T P A+ A A
Sbjct: 1 MGCSGLRLPTWAAAAPPSPSDWDGRRPRRGAPVVRRRC--SAPSSTPAPSAAAAPSHLAA 58
Query: 273 YGKPK 287
G P+
Sbjct: 59 GGSPR 63
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,949,242
Number of Sequences: 37544
Number of extensions: 444749
Number of successful extensions: 1076
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1042
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1073
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1992480932
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -