Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30075
(750 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_46389| Best HMM Match : No HMM Matches (HMM E-Value=.) 113 2e-25
SB_52883| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.25
SB_19195| Best HMM Match : LEA_4 (HMM E-Value=0.00053) 32 0.57
SB_53390| Best HMM Match : Pox_A32 (HMM E-Value=0.14) 30 1.7
SB_3451| Best HMM Match : HOK_GEF (HMM E-Value=9.4) 29 4.0
SB_17746| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.3
SB_4670| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.3
SB_10146| Best HMM Match : Collagen (HMM E-Value=0.09) 29 5.3
SB_52974| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.0
SB_16274| Best HMM Match : PKD (HMM E-Value=3.5) 28 7.0
SB_3851| Best HMM Match : TSP_1 (HMM E-Value=3.7e-24) 28 9.3
>SB_46389| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 204
Score = 113 bits (271), Expect = 2e-25
Identities = 52/85 (61%), Positives = 60/85 (70%)
Frame = +3
Query: 255 VAKGATYGKPKSHGVNQLKPTRNLQSIAEEXXXXXXXXXXXXSSYWVAQDSSYKYFEVIL 434
V KGATYGKP + GVN+LK R+L+S+AEE +SYWV QDS YKYFEVI+
Sbjct: 75 VPKGATYGKPVNQGVNELKFQRSLRSVAEERAGRYCGGLRVLNSYWVGQDSIYKYFEVIM 134
Query: 435 VDPSHKAIRRDPKINWIVNAVHKHR 509
VDP HKAIRRD +INWI HKHR
Sbjct: 135 VDPFHKAIRRDARINWICKPTHKHR 159
Score = 112 bits (270), Expect = 3e-25
Identities = 47/62 (75%), Positives = 58/62 (93%)
Frame = +1
Query: 34 MGAYRYIQELYRKKLSDVMRFLLRVRVWQYRQLTRMHRAPRPTRPDKARRLGYRAKQGYV 213
MGAY+Y++ELY+KK SD++RFLLRVR WQYRQLT +HRA RPTRPDKARRLGY+AKQG+V
Sbjct: 1 MGAYKYLEELYKKKQSDLLRFLLRVRCWQYRQLTAIHRATRPTRPDKARRLGYKAKQGFV 60
Query: 214 VF 219
++
Sbjct: 61 IY 62
Score = 61.3 bits (142), Expect = 8e-10
Identities = 27/45 (60%), Positives = 33/45 (73%)
Frame = +2
Query: 509 EMRGLTSAGRSSRGLGKGHRYSQTKGGSRRAAWLRRNTLQLRRKR 643
E+RGLT+AG +RG+ KGH Y++ G SRRA W R NTL LRR R
Sbjct: 160 ELRGLTAAGTKNRGMRKGHNYNKVIGSSRRANWKRHNTLSLRRYR 204
>SB_52883| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1434
Score = 33.1 bits (72), Expect = 0.25
Identities = 18/58 (31%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
Frame = +3
Query: 123 PSVDSYAPRSQAHKAGQSPKT-RLPC*TRLCCIQNPCATWWPQASVAKGATYGKPKSH 293
P D+ AH+ P T ++PC C QNPC+ P + +TYG P+ +
Sbjct: 239 PKTDANGGMQIAHQLPYPPYTGQIPCLPSSCAPQNPCS---PPGCTPQYSTYGYPQGY 293
>SB_19195| Best HMM Match : LEA_4 (HMM E-Value=0.00053)
Length = 1152
Score = 31.9 bits (69), Expect = 0.57
Identities = 24/80 (30%), Positives = 36/80 (45%), Gaps = 5/80 (6%)
Frame = +3
Query: 81 RCYAFFVA---CEGMA-VPSVDSYAPRSQAHKAGQSPKT-RLPC*TRLCCIQNPCATWWP 245
RCY VA C ++ P +D+ A + P T ++PC C QNPC+ P
Sbjct: 702 RCYDINVAGINCRIISHPPKIDTTGGMQMAQQLSYPPYTGQVPCLPSSCTPQNPCS---P 758
Query: 246 QASVAKGATYGKPKSHGVNQ 305
+ +T G P++ G Q
Sbjct: 759 PGCTPQYSTSGYPQAPGYPQ 778
>SB_53390| Best HMM Match : Pox_A32 (HMM E-Value=0.14)
Length = 498
Score = 30.3 bits (65), Expect = 1.7
Identities = 24/90 (26%), Positives = 41/90 (45%), Gaps = 5/90 (5%)
Frame = -3
Query: 718 LSHWLSICIQ-K*ANGKSLTVLD----RCLSFAT*LKSVASEPSCPA*ASLCLRVSMSLA 554
L+ W+ + +Q N S TV+ R +FAT + +V P A + +S+ +
Sbjct: 248 LTEWIVLYVQLSTGNYGSFTVVQLPNVRNATFATEIDNV------PNGAQETIAISLPID 301
Query: 553 ETSGAATSRSQTTHLRCLCTAFTIQLILGS 464
T+G SR T + C C + L +G+
Sbjct: 302 NTTGLTASRGYTIRIECYCIDPNVMLTMGT 331
>SB_3451| Best HMM Match : HOK_GEF (HMM E-Value=9.4)
Length = 173
Score = 29.1 bits (62), Expect = 4.0
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = +1
Query: 91 RFLLRVRVWQYRQLTRMHRAPRPTRPDKARRLGYRAKQ 204
+F ++ YR+ T+MH +RP + R G+R KQ
Sbjct: 16 KFFVKRLTTPYRRRTQMHLLVSTSRPASSWRRGFRGKQ 53
>SB_17746| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 407
Score = 28.7 bits (61), Expect = 5.3
Identities = 12/45 (26%), Positives = 21/45 (46%)
Frame = -3
Query: 598 PA*ASLCLRVSMSLAETSGAATSRSQTTHLRCLCTAFTIQLILGS 464
P A + +S+ + T+G SR T + C C + L +G+
Sbjct: 190 PNGAQETIAISLPIDNTTGLTASRGYTIRIECYCIEPNVMLTMGT 234
>SB_4670| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1012
Score = 28.7 bits (61), Expect = 5.3
Identities = 12/45 (26%), Positives = 21/45 (46%)
Frame = -3
Query: 598 PA*ASLCLRVSMSLAETSGAATSRSQTTHLRCLCTAFTIQLILGS 464
P A + +S+ + T+G SR T + C C + L +G+
Sbjct: 302 PNGAQETIAISIPIDNTTGLTASRGYTIRIECYCIDTNVMLTMGT 346
>SB_10146| Best HMM Match : Collagen (HMM E-Value=0.09)
Length = 536
Score = 28.7 bits (61), Expect = 5.3
Identities = 11/38 (28%), Positives = 19/38 (50%)
Frame = -3
Query: 577 LRVSMSLAETSGAATSRSQTTHLRCLCTAFTIQLILGS 464
+ +S+ + T+G SR TT + C C L +G+
Sbjct: 364 IAISLPIDNTTGLTASRGYTTRIECYCIDPNAMLTMGT 401
>SB_52974| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 660
Score = 28.3 bits (60), Expect = 7.0
Identities = 18/66 (27%), Positives = 30/66 (45%)
Frame = +1
Query: 16 LPQAAKMGAYRYIQELYRKKLSDVMRFLLRVRVWQYRQLTRMHRAPRPTRPDKARRLGYR 195
LP A +G Y + ++ +R + + +R + +RV+ Y T T D A G
Sbjct: 474 LPDNANLGCYPWSKQTFRHEGPNHIRTSVHIRVYAYIMSTTQQSKITKTITDAAVITGLV 533
Query: 196 AKQGYV 213
A G+V
Sbjct: 534 AGIGWV 539
>SB_16274| Best HMM Match : PKD (HMM E-Value=3.5)
Length = 351
Score = 28.3 bits (60), Expect = 7.0
Identities = 10/38 (26%), Positives = 19/38 (50%)
Frame = -3
Query: 577 LRVSMSLAETSGAATSRSQTTHLRCLCTAFTIQLILGS 464
+ +S+ + T+G SR T + C C + L +G+
Sbjct: 71 IAISLPIDNTTGLTASRGYTVRIGCYCIDSNVMLTMGT 108
>SB_3851| Best HMM Match : TSP_1 (HMM E-Value=3.7e-24)
Length = 429
Score = 27.9 bits (59), Expect = 9.3
Identities = 16/37 (43%), Positives = 19/37 (51%), Gaps = 4/37 (10%)
Frame = +3
Query: 168 GQSPKTRLPC*TRLCCIQNPCATW----WPQASVAKG 266
G+ K R P + LC + PCATW W Q SV G
Sbjct: 134 GKCDKQRQPSSSTLCNM-GPCATWQTGTWSQCSVTCG 169
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,935,463
Number of Sequences: 59808
Number of extensions: 506472
Number of successful extensions: 1224
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1223
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2034222073
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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