Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30074
         (730 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF080565-1|AAC31945.1|  324|Anopheles gambiae Antennapedia homeo...    24   4.2  
AF080564-1|AAC31944.1|  372|Anopheles gambiae Sex combs reduced ...    24   4.2  
AB090812-2|BAC57900.1| 1173|Anopheles gambiae reverse transcript...    24   4.2  
AF230521-1|AAF36974.2|  185|Anopheles gambiae homeobox transcrip...    23   9.7  

>AF080565-1|AAC31945.1|  324|Anopheles gambiae Antennapedia homeotic
           protein protein.
          Length = 324

 Score = 24.2 bits (50), Expect = 4.2
 Identities = 9/28 (32%), Positives = 17/28 (60%)
 Frame = +1

Query: 409 LTNTYRFSRFILRKRNVYIYYLLYMIER 492
           L   + F+R++ R+R + I + L + ER
Sbjct: 259 LEKEFHFNRYLTRRRRIEIAHALCLTER 286


>AF080564-1|AAC31944.1|  372|Anopheles gambiae Sex combs reduced
           homeotic protein protein.
          Length = 372

 Score = 24.2 bits (50), Expect = 4.2
 Identities = 9/28 (32%), Positives = 17/28 (60%)
 Frame = +1

Query: 409 LTNTYRFSRFILRKRNVYIYYLLYMIER 492
           L   + F+R++ R+R + I + L + ER
Sbjct: 295 LEKEFHFNRYLTRRRRIEIAHALCLTER 322


>AB090812-2|BAC57900.1| 1173|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1173

 Score = 24.2 bits (50), Expect = 4.2
 Identities = 9/18 (50%), Positives = 14/18 (77%)
 Frame = -3

Query: 122 NNSKCRRLNEKLLKKSAV 69
           N  +CRRL E++ +KSA+
Sbjct: 819 NTRECRRLLERVQRKSAI 836


>AF230521-1|AAF36974.2|  185|Anopheles gambiae homeobox
           transcription factor protein.
          Length = 185

 Score = 23.0 bits (47), Expect = 9.7
 Identities = 9/28 (32%), Positives = 17/28 (60%)
 Frame = +1

Query: 409 LTNTYRFSRFILRKRNVYIYYLLYMIER 492
           L   + F+R++ R+R + I  +L + ER
Sbjct: 21  LEKEFHFNRYLNRRRRIEIASMLKLTER 48


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 696,901
Number of Sequences: 2352
Number of extensions: 12470
Number of successful extensions: 12
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 563,979
effective HSP length: 63
effective length of database: 415,803
effective search space used: 74428737
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)