Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30074
         (730 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g04530.1 68418.m00453 beta-ketoacyl-CoA synthase family prote...    27   9.6  

>At5g04530.1 68418.m00453 beta-ketoacyl-CoA synthase family protein
           KCS1 fatty acid elongase 3-ketoacyl-CoA synthase 1,
           Arabidopsis thaliana, EMBL:AF053345
          Length = 464

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 13/35 (37%), Positives = 22/35 (62%)
 Frame = -3

Query: 518 IISLHFTLFLSIMYNK*YIYTFLFRKMNRENLYVL 414
           + SL   L LS ++   YI+ F+F++ N+ N Y+L
Sbjct: 3   LFSLSSLLLLSTLFVF-YIFKFVFKRRNQRNCYML 36


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,687,124
Number of Sequences: 28952
Number of extensions: 258006
Number of successful extensions: 450
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 438
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 450
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1594686376
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)