Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30072
(723 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_53271| Best HMM Match : No HMM Matches (HMM E-Value=.) 164 6e-41
SB_23885| Best HMM Match : Peptidase_S10 (HMM E-Value=0) 29 3.8
SB_11242| Best HMM Match : MAM (HMM E-Value=0) 29 5.0
SB_40498| Best HMM Match : CXCXC (HMM E-Value=4.1) 29 5.0
SB_6632| Best HMM Match : FAD_binding_4 (HMM E-Value=1.70006e-41) 28 6.7
SB_20311| Best HMM Match : PAN (HMM E-Value=0.00055) 28 6.7
SB_46368| Best HMM Match : DUF156 (HMM E-Value=6.5) 28 8.8
SB_41068| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.8
>SB_53271| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 687
Score = 164 bits (399), Expect = 6e-41
Identities = 74/84 (88%), Positives = 78/84 (92%)
Frame = +1
Query: 1 ARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEV 180
ARGPKKH+KRLNAPK WMLDKL GV+APRPSTGPHKLRECLPL+IFLRNRLKYAL G EV
Sbjct: 426 ARGPKKHMKRLNAPKHWMLDKLSGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALNGEEV 485
Query: 181 LKIVKQRLIKVDGKVRTDPTYPAG 252
KIVKQRLIK+DGKVRTD TYPAG
Sbjct: 486 KKIVKQRLIKIDGKVRTDTTYPAG 509
Score = 135 bits (327), Expect = 3e-32
Identities = 76/160 (47%), Positives = 97/160 (60%), Gaps = 4/160 (2%)
Frame = +3
Query: 255 MDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRT 434
MDVV+I+KT E FRL+YDVKGRF +HRIT EEAKYKL +V+RV G K VPY+VTHD RT
Sbjct: 511 MDVVTIDKTGENFRLLYDVKGRFAVHRITAEEAKYKLGRVRRVDVGAKGVPYIVTHDART 570
Query: 435 IRYPDPLIKVNDSIQLDIATTKIMDSSSLSLGTCV*SREAVTWGVWAPSCPARDIPAPST 614
IRYPDP IKVND++ +DI T K++D G G R+ A S
Sbjct: 571 IRYPDPNIKVNDTVVIDIKTGKVIDYIKFDTGNMAMVVGGRNMG-RVGMVTHREKHAGSF 629
Query: 615 LCTSRTPRDTLRHEVEQRVHN----RQGHEAYISLPRGKG 722
+D H+ R+ N +G++ Y+SLP+GKG
Sbjct: 630 DIVH--VKDATGHQFATRLTNIFVIGKGNKPYVSLPKGKG 667
Score = 77.0 bits (181), Expect = 1e-14
Identities = 29/45 (64%), Positives = 39/45 (86%)
Frame = +2
Query: 509 FIKFESGNLCMITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGH 643
+IKF++GN+ M+ GGRN+GRVG + RE+H GSFDIVH+KD+TGH
Sbjct: 596 YIKFDTGNMAMVVGGRNMGRVGMVTHREKHAGSFDIVHVKDATGH 640
Score = 33.1 bits (72), Expect = 0.23
Identities = 13/19 (68%), Positives = 15/19 (78%)
Frame = +1
Query: 637 GTHFATRLNNVFIIGKGTK 693
G FATRL N+F+IGKG K
Sbjct: 639 GHQFATRLTNIFVIGKGNK 657
>SB_23885| Best HMM Match : Peptidase_S10 (HMM E-Value=0)
Length = 446
Score = 29.1 bits (62), Expect = 3.8
Identities = 17/36 (47%), Positives = 20/36 (55%)
Frame = -3
Query: 661 STSWRSVSRGVLDVHNVEGAGMSLAGHDGAHTPQVT 554
+TSW V+ VL V N GAG S GA+T VT
Sbjct: 97 NTSWVEVAN-VLFVDNPVGAGFSYVTDKGAYTTNVT 131
>SB_11242| Best HMM Match : MAM (HMM E-Value=0)
Length = 348
Score = 28.7 bits (61), Expect = 5.0
Identities = 12/20 (60%), Positives = 16/20 (80%), Gaps = 2/20 (10%)
Frame = +3
Query: 141 EES--SEVCFDRKRSPENCE 194
EES +E+C DRKR P++CE
Sbjct: 76 EESRYNELCHDRKRGPDDCE 95
>SB_40498| Best HMM Match : CXCXC (HMM E-Value=4.1)
Length = 203
Score = 28.7 bits (61), Expect = 5.0
Identities = 13/49 (26%), Positives = 21/49 (42%)
Frame = +3
Query: 576 PSCPARDIPAPSTLCTSRTPRDTLRHEVEQRVHNRQGHEAYISLPRGKG 722
P C ++P +C S D L + Q+++ G Y +P G G
Sbjct: 40 PPCRVNELPEIDAVCISHNHYDHLDYNTVQQLNAHCGSNIYWYVPMGLG 88
>SB_6632| Best HMM Match : FAD_binding_4 (HMM E-Value=1.70006e-41)
Length = 482
Score = 28.3 bits (60), Expect = 6.7
Identities = 19/63 (30%), Positives = 32/63 (50%)
Frame = +3
Query: 240 LSCWIMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVT 419
L W+ S K N ++ I D+ R I +TP+ K C+V R++TGP +++
Sbjct: 261 LGGWVATRASGMKKN-VYGNIEDIIVR--IRMVTPQGTVEKSCQVPRMSTGPDLHHFIMG 317
Query: 420 HDG 428
+G
Sbjct: 318 SEG 320
>SB_20311| Best HMM Match : PAN (HMM E-Value=0.00055)
Length = 443
Score = 28.3 bits (60), Expect = 6.7
Identities = 19/51 (37%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Frame = +1
Query: 565 ACGHH-RVPRETSRLLRHCAHQGLHGTHFATRLNNVFIIGKGTK-RTSRCR 711
ACG R+P + S L R+CA G +GT ++ GTK TS+ R
Sbjct: 245 ACGSFVRLPEDDSILTRNCAKWGSNGTLPEGEWGKNALLKDGTKTETSKIR 295
>SB_46368| Best HMM Match : DUF156 (HMM E-Value=6.5)
Length = 203
Score = 27.9 bits (59), Expect = 8.8
Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Frame = -2
Query: 140 RKITRGKHSRNLWGPVDGLGAYTPPSLSNIHALGAF-KRFKCFLGPR 3
RK +R N++G ++GLG+ PP + I F K K F PR
Sbjct: 60 RKRSRSLPRTNVFGTLNGLGSPPPPRDNRIDEYAEFTKSQKSFTFPR 106
>SB_41068| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 141
Score = 27.9 bits (59), Expect = 8.8
Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 6/45 (13%)
Frame = -2
Query: 218 PSTFMRRCFTIFRTSFPVKAYFRRFLRK------ITRGKHSRNLW 102
PS++ F +FRT FP + RF R+ IT ++LW
Sbjct: 84 PSSYNGHQFLVFRTDFPFSKHKNRFKRRTKYLYVITTSTKHQHLW 128
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,720,225
Number of Sequences: 59808
Number of extensions: 588410
Number of successful extensions: 1585
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1458
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1582
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1925890720
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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