Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30072
         (723 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024780-6|AAF60569.1|  259|Caenorhabditis elegans Ribosomal pro...   126   1e-29
U97189-1|AAC48164.1|  623|Caenorhabditis elegans Hypothetical pr...    30   1.9  
AL110490-13|CAB54454.1|  377|Caenorhabditis elegans Hypothetical...    29   3.4  
AL110490-12|CAB54447.1|  326|Caenorhabditis elegans Hypothetical...    29   3.4  
AC024792-1|AAK84610.1|  938|Caenorhabditis elegans Importin beta...    28   5.9  
AC006834-7|AAF40003.2|  176|Caenorhabditis elegans Lipid deplete...    28   7.8  

>AC024780-6|AAF60569.1|  259|Caenorhabditis elegans Ribosomal
           protein, small subunitprotein 4 protein.
          Length = 259

 Score =  126 bits (305), Expect = 1e-29
 Identities = 60/97 (61%), Positives = 70/97 (72%)
 Frame = +1

Query: 4   RGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVL 183
           RGPKKHLKRL AP  WMLDKLGGV+A RP+ GPHKLRE LPL +FLRNRLKYAL   E  
Sbjct: 2   RGPKKHLKRLAAPSHWMLDKLGGVFAVRPNPGPHKLRESLPLSLFLRNRLKYALNYTEAK 61

Query: 184 KIVKQRLIKVDGKVRTDPTYPAGLWMLSQLRRLMNCF 294
           KI+ QR+++VDGKVRT   +P G   +  + R    F
Sbjct: 62  KILTQRVVRVDGKVRTCHKFPTGFMDVVAIERTNEYF 98



 Score =  123 bits (297), Expect = 1e-28
 Identities = 70/160 (43%), Positives = 90/160 (56%), Gaps = 4/160 (2%)
 Frame = +3

Query: 255 MDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRT 434
           MDVV+IE+TNE FR++YD KGR+ +HRI   EA +KLCKVK V T  K VP L T DGRT
Sbjct: 86  MDVVAIERTNEYFRMLYDTKGRYVVHRIQAAEADFKLCKVKSVRTVNKGVPVLTTTDGRT 145

Query: 435 IRYPDPLIKVNDSIQLDIATTKIMDSSSLSLGTCV*SREAVTWGVWAPSCPARDIPAPST 614
           IRYPDP +KVND+I  +I+T KI DS     G           G          +P  S 
Sbjct: 146 IRYPDPHVKVNDTIVFNISTQKITDSVKFEPGNLAYVTGGRNVGRVGIIGHRERLPGASD 205

Query: 615 LCTSRTPRDTLRHEVEQRVHN----RQGHEAYISLPRGKG 722
           +      +D+  H    R+ N     +G++A +SLP G G
Sbjct: 206 IIHI---KDSAGHSFATRISNVFVIGKGNKALVSLPTGAG 242


>U97189-1|AAC48164.1|  623|Caenorhabditis elegans Hypothetical
           protein C48B6.4 protein.
          Length = 623

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 6/50 (12%)
 Frame = +3

Query: 315 GRFTIHRITPEEAKYKLCKVKRVATGPKNVP-----YLVTHDGRTIR-YP 446
           G+  + R+T  E  Y+ CK+++ A   K VP     Y+V H  R I+ YP
Sbjct: 302 GQIIVRRLTDPEYPYRHCKIQKFAVRCKLVPENYGWYVVWHCQRDIQEYP 351


>AL110490-13|CAB54454.1|  377|Caenorhabditis elegans Hypothetical
           protein Y48B6A.13b protein.
          Length = 377

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 14/28 (50%), Positives = 19/28 (67%)
 Frame = +1

Query: 532 LVYDHGRP*LGACGHHRVPRETSRLLRH 615
           LV+D GR  +G+    R  RETS+LL+H
Sbjct: 207 LVFDDGRKKVGSSEGMRRSRETSQLLKH 234


>AL110490-12|CAB54447.1|  326|Caenorhabditis elegans Hypothetical
           protein Y48B6A.13a protein.
          Length = 326

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 14/28 (50%), Positives = 19/28 (67%)
 Frame = +1

Query: 532 LVYDHGRP*LGACGHHRVPRETSRLLRH 615
           LV+D GR  +G+    R  RETS+LL+H
Sbjct: 156 LVFDDGRKKVGSSEGMRRSRETSQLLKH 183


>AC024792-1|AAK84610.1|  938|Caenorhabditis elegans Importin beta
            family protein 5 protein.
          Length = 938

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 16/55 (29%), Positives = 23/55 (41%)
 Frame = -3

Query: 472  ESLTLISGSG*RMVRPSCVTKYGTFLGPVATRLTLHNLYLASSGVIRWIVNLPLT 308
            E  ++ +  G   V P C   Y     PVA  +  H  Y A + ++R   N P T
Sbjct: 868  EQASMYNAEG-EFVNPFCRLSYAPKQPPVAANIANHKAYFAQAVLVRGPGNCPET 921


>AC006834-7|AAF40003.2|  176|Caenorhabditis elegans Lipid depleted
           protein 5 protein.
          Length = 176

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 12/49 (24%), Positives = 25/49 (51%)
 Frame = +3

Query: 381 VATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDSSSLSL 527
           ++TG  N+P   +HD + +   D L K +    + +++ + MD   + L
Sbjct: 20  LSTGKDNLPVTRSHDAKKVELNDILDKPSQKTPVKVSSDETMDIGGVPL 68


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,386,079
Number of Sequences: 27780
Number of extensions: 416041
Number of successful extensions: 1246
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1165
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1243
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1697838058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)