Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30071
         (739 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    23   2.6  
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    23   2.6  
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    23   2.6  
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    23   2.6  
EU019713-1|ABU25225.1|  528|Tribolium castaneum chitin deacetyla...    22   4.5  
EU019712-1|ABU25224.1|  535|Tribolium castaneum chitin deacetyla...    22   4.5  
S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Triboliu...    21   7.9  

>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
           variant 2 protein.
          Length = 1558

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 9/34 (26%), Positives = 18/34 (52%)
 Frame = -1

Query: 382 PTVENLTAIGVLLPMDSNTLAALYLVMS*VTSKY 281
           P +  +   G    MDSN + A+Y+++  + + Y
Sbjct: 356 PDISEIIPTGDDTTMDSNDMTAIYVLLINIFASY 389


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
           variant 1 protein.
          Length = 1558

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 9/34 (26%), Positives = 18/34 (52%)
 Frame = -1

Query: 382 PTVENLTAIGVLLPMDSNTLAALYLVMS*VTSKY 281
           P +  +   G    MDSN + A+Y+++  + + Y
Sbjct: 356 PDISEIIPTGDDTTMDSNDMTAIYVLLINIFASY 389


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase
           CHS1B protein.
          Length = 1558

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 9/34 (26%), Positives = 18/34 (52%)
 Frame = -1

Query: 382 PTVENLTAIGVLLPMDSNTLAALYLVMS*VTSKY 281
           P +  +   G    MDSN + A+Y+++  + + Y
Sbjct: 356 PDISEIIPTGDDTTMDSNDMTAIYVLLINIFASY 389


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase
           CHS1A protein.
          Length = 1558

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 9/34 (26%), Positives = 18/34 (52%)
 Frame = -1

Query: 382 PTVENLTAIGVLLPMDSNTLAALYLVMS*VTSKY 281
           P +  +   G    MDSN + A+Y+++  + + Y
Sbjct: 356 PDISEIIPTGDDTTMDSNDMTAIYVLLINIFASY 389


>EU019713-1|ABU25225.1|  528|Tribolium castaneum chitin deacetylase
           2B protein.
          Length = 528

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 11/38 (28%), Positives = 18/38 (47%)
 Frame = +3

Query: 213 NVIL*QGAYSRTSGHAKGAGAFGYFEVTHDITKYSAAK 326
           N+ L +  ++    +  G    G F V+H  T YSA +
Sbjct: 199 NIDLYEEIFNGNRANPNGCQIRGTFFVSHKYTNYSAVQ 236


>EU019712-1|ABU25224.1|  535|Tribolium castaneum chitin deacetylase
           2A protein.
          Length = 535

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 11/38 (28%), Positives = 18/38 (47%)
 Frame = +3

Query: 213 NVIL*QGAYSRTSGHAKGAGAFGYFEVTHDITKYSAAK 326
           N+ L +  ++    +  G    G F V+H  T YSA +
Sbjct: 206 NIDLYEEIFNGNRANPNGCQIRGTFFVSHKYTNYSAVQ 243


>S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Tribolium
           castaneum homeodomainprotein mRNA, complete cds. ).
          Length = 327

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 10/33 (30%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
 Frame = +1

Query: 49  RDPATDQLINYKKTLKDSPGFIT-TKSGAPVGI 144
           + P++ ++ +   T   SPGF+T TK+   V +
Sbjct: 65  KSPSSPRISSPSSTKSGSPGFLTYTKADRDVDL 97


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 193,212
Number of Sequences: 336
Number of extensions: 4413
Number of successful extensions: 20
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 19779950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)