Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30071
         (739 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC757.07c |ctt1|cta1|catalase|Schizosaccharomyces pombe|chr 3|...   138   1e-33
SPAC3G6.01 |hrp3||ATP-dependent DNA helicase Hrp3|Schizosaccharo...    27   2.1  
SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces po...    26   4.9  
SPAC17C9.01c |nuc2|apc3, SPAC1851.01|anaphase-promoting complex ...    26   6.4  
SPAC11E3.06 |map1||MADS-box transcription factor Map1|Schizosacc...    25   8.5  
SPBC25H2.03 |||vacuolar protein involved in phosphoinositide met...    25   8.5  

>SPCC757.07c |ctt1|cta1|catalase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 512

 Score =  138 bits (333), Expect = 1e-33
 Identities = 57/84 (67%), Positives = 71/84 (84%)
 Frame = +3

Query: 255 HAKGAGAFGYFEVTHDITKYSAAKVFESIGKRTPIAVRFSTVGGESGSADTVRDPRGFAV 434
           HAKG+GAFG FE T DITKY+   +F  +GK+TP+  RFSTVGGE G+ DT RDPRGFA+
Sbjct: 60  HAKGSGAFGEFECTDDITKYTKHTMFSKVGKKTPMVARFSTVGGERGTPDTARDPRGFAL 119

Query: 435 KFYTDDGVWDLVGNNTPIFFIRDP 506
           KFYTD+G++D+VGNNTP+FF+RDP
Sbjct: 120 KFYTDEGIFDMVGNNTPVFFLRDP 143



 Score = 94.7 bits (225), Expect = 1e-20
 Identities = 41/77 (53%), Positives = 53/77 (68%), Gaps = 1/77 (1%)
 Frame = +2

Query: 512 FPSFIHTQKRNPATHLKDPDMFWDLLTLRPETIHQLLYLFGD-RGIPDGYRHMNGYGSHT 688
           FP FIHTQKRNP   +KD  MFWD L+   E+IHQ++ LF D  G P  YR M+G+ SHT
Sbjct: 146 FPLFIHTQKRNPQNDMKDATMFWDYLSQNAESIHQVMILFSDLGGTPYSYRFMDGFSSHT 205

Query: 689 FKLVNSQGVGYWVKFHY 739
           +K VN +G  Y+ K+H+
Sbjct: 206 YKFVNDKGEFYYCKWHF 222



 Score = 55.2 bits (127), Expect = 9e-09
 Identities = 26/47 (55%), Positives = 30/47 (63%)
 Frame = +1

Query: 115 TTKSGAPVGIKTAIQTVGKNGPALLQDVNFLDEMSSFDRERIPERVV 255
           TT +G P+    A   VGK GP LLQD + +D    FDRERIPERVV
Sbjct: 13  TTNTGCPIFNPMAAARVGKGGPVLLQDSHLIDVFQHFDRERIPERVV 59


>SPAC3G6.01 |hrp3||ATP-dependent DNA helicase
           Hrp3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1388

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 12/43 (27%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
 Frame = -2

Query: 432 QQNLEGHEQYQQIHSLHQLLRI*QQSVSFCL-WTQILWQHCTW 307
           ++  E +E+Y+Q+  +         SV + + W Q+L+  CTW
Sbjct: 278 ERKRENYEEYKQVDRIVAKHLNSDGSVEYLVKWKQLLYDFCTW 320


>SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 401

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 17/58 (29%), Positives = 28/58 (48%), Gaps = 2/58 (3%)
 Frame = +3

Query: 420 RGFAVKFYTDDGVWDLVGNNTPIFFIRDPTYSRVLS--ILRRETLQHI*KIQTCFGTF 587
           +G+ V + T+  VWDLV  N  +       YS +L+  +    +++H   IQ  F  F
Sbjct: 65  KGYLVHWSTETAVWDLVMRNVGVMEPSMADYSLLLTQPVFTMPSIEHN-TIQLVFEEF 121


>SPAC17C9.01c |nuc2|apc3, SPAC1851.01|anaphase-promoting complex
           subunit Apc3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 665

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 13/28 (46%), Positives = 19/28 (67%)
 Frame = -1

Query: 406 VSADPLSPPTVENLTAIGVLLPMDSNTL 323
           VS +P +    +NLTAIGV  P+D+N +
Sbjct: 142 VSINPYNFSAFQNLTAIGV--PLDANNV 167


>SPAC11E3.06 |map1||MADS-box transcription factor
           Map1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 398

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 15/63 (23%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
 Frame = +1

Query: 61  TDQLINYKKTLKDSPGFIT-TKSGAPVGIKTAIQTVGKNGPALLQDVNFLDEMSSFDRER 237
           TDQ  +     K S   ++ ++SG P+  +  ++   +NGP+ ++++NF  ++ +F +  
Sbjct: 101 TDQNESQASQAKQSSAQLSDSESGYPLDHEE-MRISEENGPSHIENLNFFSDIDNFSKTS 159

Query: 238 IPE 246
             E
Sbjct: 160 AEE 162


>SPBC25H2.03 |||vacuolar protein involved in phosphoinositide
           metabolism|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 811

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 16/56 (28%), Positives = 26/56 (46%)
 Frame = -3

Query: 176 PFLPTVCIAVLIPTGAPDLVVMKPGESFKVFL*LMSWSVAGSLEAILYVPFLLCGV 9
           P + T  ++ L+P  +  L V+ P     +   +        LE I Y+PFLL G+
Sbjct: 195 PRMHTFSLSELVPLLSERLYVINPNTRMFLVSWIRLLDSIPDLEFISYLPFLLDGL 250


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,362,359
Number of Sequences: 5004
Number of extensions: 72419
Number of successful extensions: 210
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 200
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 209
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 349251756
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)