Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30071
(739 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0223 - 1766292-1766442,1767621-1767676,1767798-1767891,176... 118 5e-27
02_01_0111 - 825369-825428,825778-826380,826467-827267,827716-82... 117 8e-27
06_03_1479 + 30428488-30428502,30428619-30428715,30429627-304299... 113 1e-25
01_05_0653 - 23948911-23948937,23949031-23949141,23949361-239494... 35 0.059
05_03_0075 + 8146249-8146314,8146406-8146488,8148137-8148194 29 3.9
02_04_0496 + 23446039-23446964,23452755-23452845,23452946-234529... 28 6.7
02_03_0141 - 15649188-15649274,15649376-15649421,15650476-156506... 28 6.7
02_04_0493 + 23435395-23436003 28 8.9
>03_01_0223 -
1766292-1766442,1767621-1767676,1767798-1767891,
1768004-1768071,1768441-1769585,1770072-1770168,
1770265-1770279
Length = 541
Score = 118 bits (284), Expect = 5e-27
Identities = 53/83 (63%), Positives = 64/83 (77%)
Frame = +3
Query: 255 HAKGAGAFGYFEVTHDITKYSAAKVFESIGKRTPIAVRFSTVGGESGSADTVRDPRGFAV 434
HA+GA A G+FEVTHDIT + A + G +TP+ VRFSTV E GS +T+RDPRGFA+
Sbjct: 65 HARGASAKGFFEVTHDITHLTCADFLRAPGVQTPVIVRFSTVIHERGSPETLRDPRGFAI 124
Query: 435 KFYTDDGVWDLVGNNTPIFFIRD 503
KFYT +G WDLVGNN P+FFIRD
Sbjct: 125 KFYTREGNWDLVGNNFPVFFIRD 147
Score = 78.6 bits (185), Expect = 5e-15
Identities = 33/84 (39%), Positives = 50/84 (59%)
Frame = +2
Query: 488 FLYKRSNLFPSFIHTQKRNPATHLKDPDMFWDLLTLRPETIHQLLYLFGDRGIPDGYRHM 667
F + FP +H+ K NP +H+++ D + PE++H +LF D GIP YRHM
Sbjct: 143 FFIRDGMKFPDMVHSLKPNPKSHVQENWRILDFFSHHPESLHMFTFLFDDIGIPADYRHM 202
Query: 668 NGYGSHTFKLVNSQGVGYWVKFHY 739
+G G +T+ LVN G ++VKFH+
Sbjct: 203 DGSGVNTYTLVNRAGKSHYVKFHW 226
Score = 55.2 bits (127), Expect = 5e-08
Identities = 25/47 (53%), Positives = 34/47 (72%)
Frame = +1
Query: 115 TTKSGAPVGIKTAIQTVGKNGPALLQDVNFLDEMSSFDRERIPERVV 255
+T SGAPV TVG GP LL+D + ++++++FDRERIPERVV
Sbjct: 18 STNSGAPVWNNNNSLTVGSRGPILLEDYHLVEKLANFDRERIPERVV 64
>02_01_0111 -
825369-825428,825778-826380,826467-827267,827716-827766
Length = 504
Score = 117 bits (282), Expect = 8e-27
Identities = 52/83 (62%), Positives = 63/83 (75%)
Frame = +3
Query: 255 HAKGAGAFGYFEVTHDITKYSAAKVFESIGKRTPIAVRFSTVGGESGSADTVRDPRGFAV 434
HA+GA A G+FE THD+T + A S G +TP+ VRFSTV E GS +T+RDPRGFAV
Sbjct: 77 HARGASAKGFFECTHDVTDITCADFLRSPGAQTPVIVRFSTVIHERGSPETIRDPRGFAV 136
Query: 435 KFYTDDGVWDLVGNNTPIFFIRD 503
KFYT +G WDL+GNN P+FFIRD
Sbjct: 137 KFYTREGNWDLLGNNFPVFFIRD 159
Score = 74.1 bits (174), Expect = 1e-13
Identities = 31/76 (40%), Positives = 46/76 (60%)
Frame = +2
Query: 512 FPSFIHTQKRNPATHLKDPDMFWDLLTLRPETIHQLLYLFGDRGIPDGYRHMNGYGSHTF 691
FP IH K NP +H+++ +D L+ PE++H +LF D GIP YRHM+G+G +T+
Sbjct: 163 FPDVIHAFKPNPRSHVQEYWRVFDFLSHHPESLHTFFFLFDDVGIPTDYRHMDGFGVNTY 222
Query: 692 KLVNSQGVGYWVKFHY 739
V +VKFH+
Sbjct: 223 TFVTRDAKARYVKFHW 238
Score = 51.6 bits (118), Expect = 6e-07
Identities = 24/47 (51%), Positives = 32/47 (68%)
Frame = +1
Query: 115 TTKSGAPVGIKTAIQTVGKNGPALLQDVNFLDEMSSFDRERIPERVV 255
TT +GAPV TVG GP LL+D + +++++ F RERIPERVV
Sbjct: 30 TTNAGAPVWNDNEALTVGPRGPILLEDYHLIEKVAHFARERIPERVV 76
>06_03_1479 +
30428488-30428502,30428619-30428715,30429627-30429904,
30430256-30431032,30431254-30431343,30431538-30431605,
30431696-30431789,30431902-30431961
Length = 492
Score = 113 bits (273), Expect = 1e-25
Identities = 52/83 (62%), Positives = 64/83 (77%)
Frame = +3
Query: 255 HAKGAGAFGYFEVTHDITKYSAAKVFESIGKRTPIAVRFSTVGGESGSADTVRDPRGFAV 434
HA+GA A G+FEVTHDI+ + A + G +TP+ VRFSTV E GS +T+RDPRGFAV
Sbjct: 65 HARGASAKGFFEVTHDISHLTCADFLRAPGVQTPVIVRFSTVVHERGSPETLRDPRGFAV 124
Query: 435 KFYTDDGVWDLVGNNTPIFFIRD 503
KFYT +G +DLVGNN P+FFIRD
Sbjct: 125 KFYTREGNFDLVGNNMPVFFIRD 147
Score = 73.3 bits (172), Expect = 2e-13
Identities = 31/84 (36%), Positives = 48/84 (57%)
Frame = +2
Query: 488 FLYKRSNLFPSFIHTQKRNPATHLKDPDMFWDLLTLRPETIHQLLYLFGDRGIPDGYRHM 667
F + FP +H K +P T++++ D + PE++H +LF D GIP YRHM
Sbjct: 143 FFIRDGMKFPDMVHAFKPSPKTNMQENWRIVDFFSHHPESLHMFSFLFDDVGIPLNYRHM 202
Query: 668 NGYGSHTFKLVNSQGVGYWVKFHY 739
G+G +T+ L+N G + VKFH+
Sbjct: 203 EGFGVNTYTLINKDGKPHLVKFHW 226
Score = 60.1 bits (139), Expect = 2e-09
Identities = 27/49 (55%), Positives = 36/49 (73%)
Frame = +1
Query: 109 FITTKSGAPVGIKTAIQTVGKNGPALLQDVNFLDEMSSFDRERIPERVV 255
F TT SGAPV + TVG+ GP LL+D + +++++ FDRERIPERVV
Sbjct: 16 FWTTNSGAPVWNNNSALTVGERGPILLEDYHLIEKLAQFDRERIPERVV 64
>01_05_0653 -
23948911-23948937,23949031-23949141,23949361-23949441,
23949865-23949984,23950088-23950252,23950344-23950493,
23950565-23950674,23951401-23951518,23951597-23951827,
23952345-23952524,23953639-23953908,23954930-23954979,
23955213-23955288,23955396-23955483,23956010-23956101,
23956200-23956529,23957484-23957593,23957810-23957907,
23959538-23959566
Length = 811
Score = 35.1 bits (77), Expect = 0.059
Identities = 17/44 (38%), Positives = 25/44 (56%)
Frame = -2
Query: 513 NKLDLL*RKWEYYFQLNPTLHHQYRTLQQNLEGHEQYQQIHSLH 382
NK+D+L K + QL H Q + LQQ+ H+Q Q ++ LH
Sbjct: 374 NKIDMLIAKIAHLQQLQQQGHSQQQQLQQSTISHQQAQSLNQLH 417
>05_03_0075 + 8146249-8146314,8146406-8146488,8148137-8148194
Length = 68
Score = 29.1 bits (62), Expect = 3.9
Identities = 16/49 (32%), Positives = 24/49 (48%)
Frame = -2
Query: 519 LGNKLDLL*RKWEYYFQLNPTLHHQYRTLQQNLEGHEQYQQIHSLHQLL 373
L NKL+ + W Q P + Y T++++ GHE YQ+ LL
Sbjct: 11 LDNKLE---QPWPQKLQPKPIVTDVYSTVKRDGHGHEMYQEFRFRRWLL 56
>02_04_0496 +
23446039-23446964,23452755-23452845,23452946-23452996,
23453080-23453206,23453390-23453425,23453443-23453473,
23453488-23453576,23454341-23454462,23455601-23455778,
23458343-23458470,23458592-23458658,23459167-23459272,
23459365-23459473,23459965-23460084,23460187-23460220,
23460471-23460547,23460640-23460692,23460847-23460898,
23461270-23461767
Length = 964
Score = 28.3 bits (60), Expect = 6.7
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = -3
Query: 206 RKLTSCNKAGPFLPTVCIAVLIPTGAPDLVVMKPGES 96
R L SC GP PT C ++I P+L +PG++
Sbjct: 109 RCLLSC--CGPMDPTSCTVLVIDLAYPELWYCRPGDN 143
>02_03_0141 -
15649188-15649274,15649376-15649421,15650476-15650606,
15652168-15652254,15652470-15652538,15652699-15652845,
15652923-15653003,15653122-15653223,15653392-15653429,
15653590-15653692,15653766-15653888,15654872-15654951,
15655356-15655504,15657794-15658010,15658379-15658448,
15659167-15659313,15659430-15659486,15663270-15663436,
15663479-15663569,15664044-15665081,15665580-15665695,
15666104-15667039,15667108-15667170,15667416-15667970,
15668293-15668305
Length = 1570
Score = 28.3 bits (60), Expect = 6.7
Identities = 13/31 (41%), Positives = 21/31 (67%)
Frame = -2
Query: 480 YYFQLNPTLHHQYRTLQQNLEGHEQYQQIHS 388
Y++ +PTL H+YR + +L +EQ QQ+ S
Sbjct: 363 YFYDDDPTLEHRYRRCRPDL--YEQDQQVVS 391
>02_04_0493 + 23435395-23436003
Length = 202
Score = 27.9 bits (59), Expect = 8.9
Identities = 16/42 (38%), Positives = 22/42 (52%)
Frame = -3
Query: 206 RKLTSCNKAGPFLPTVCIAVLIPTGAPDLVVMKPGESFKVFL 81
R L SC GP PT C ++I P+L +PG++ V L
Sbjct: 111 RCLLSC--CGPMDPTSCTDLVIDLADPELWYCRPGDNHWVKL 150
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,439,195
Number of Sequences: 37544
Number of extensions: 468156
Number of successful extensions: 1153
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1152
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1945321620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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