Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30070
         (685 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembran...    26   0.25 
AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembran...    26   0.25 
DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    23   3.1  
AY052394-1|AAL15468.1|  228|Tribolium castaneum tryptophan oxyge...    21   7.1  
AY052392-1|AAL15466.1|  388|Tribolium castaneum tryptophan oxyge...    21   7.1  
AY052390-1|AAL15464.1|  388|Tribolium castaneum tryptophan oxyge...    21   7.1  
U09586-3|AAC47272.1|  470|Tribolium castaneum integrase protein.       21   9.4  
AJ845187-1|CAH60164.1|  515|Tribolium castaneum esterase protein.      21   9.4  
AJ844897-1|CAH59956.1|  517|Tribolium castaneum esterase protein.      21   9.4  

>AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembrane
           transporter protein.
          Length = 669

 Score = 26.2 bits (55), Expect = 0.25
 Identities = 11/33 (33%), Positives = 20/33 (60%)
 Frame = +1

Query: 145 DGHLLTRTFLVTERITLADVIVFSTLLHAFQHV 243
           DGH++  TF  +E   + DV++ + L+  F+ V
Sbjct: 624 DGHVILETFHFSEADFVMDVVMLAVLIVGFRLV 656


>AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembrane
           transporter white protein.
          Length = 669

 Score = 26.2 bits (55), Expect = 0.25
 Identities = 11/33 (33%), Positives = 20/33 (60%)
 Frame = +1

Query: 145 DGHLLTRTFLVTERITLADVIVFSTLLHAFQHV 243
           DGH++  TF  +E   + DV++ + L+  F+ V
Sbjct: 624 DGHVILETFHFSEADFVMDVVMLAVLIVGFRLV 656


>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 22.6 bits (46), Expect = 3.1
 Identities = 9/28 (32%), Positives = 13/28 (46%)
 Frame = -1

Query: 376 FLGSYVGGAAQSVSEPTTADTCGWWATV 293
           F+ S  GG   S+ +  T   CG W  +
Sbjct: 208 FVLSRAGGLVNSLYQNATRKVCGVWKRI 235


>AY052394-1|AAL15468.1|  228|Tribolium castaneum tryptophan
           oxygenase protein.
          Length = 228

 Score = 21.4 bits (43), Expect = 7.1
 Identities = 11/31 (35%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
 Frame = +2

Query: 137 KYWTDIFSHAPSLLPRESHLPMSLS-SVHCC 226
           K + D+F+ +  L+PR    P+S S   H C
Sbjct: 182 KVFVDLFNLSTFLIPRSYIPPLSTSMRSHLC 212


>AY052392-1|AAL15466.1|  388|Tribolium castaneum tryptophan
           oxygenase protein.
          Length = 388

 Score = 21.4 bits (43), Expect = 7.1
 Identities = 11/31 (35%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
 Frame = +2

Query: 137 KYWTDIFSHAPSLLPRESHLPMSLS-SVHCC 226
           K + D+F+ +  L+PR    P+S S   H C
Sbjct: 342 KVFVDLFNLSTFLIPRSYIPPLSTSMRSHLC 372


>AY052390-1|AAL15464.1|  388|Tribolium castaneum tryptophan
           oxygenase protein.
          Length = 388

 Score = 21.4 bits (43), Expect = 7.1
 Identities = 11/31 (35%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
 Frame = +2

Query: 137 KYWTDIFSHAPSLLPRESHLPMSLS-SVHCC 226
           K + D+F+ +  L+PR    P+S S   H C
Sbjct: 342 KVFVDLFNLSTFLIPRSYIPPLSTSMRSHLC 372


>U09586-3|AAC47272.1|  470|Tribolium castaneum integrase protein.
          Length = 470

 Score = 21.0 bits (42), Expect = 9.4
 Identities = 8/24 (33%), Positives = 13/24 (54%)
 Frame = +2

Query: 518 DPFDSMPKGTFNMDDFKRVYSNED 589
           DP  +  KG +NM + K  +  +D
Sbjct: 447 DPVTNEIKGVYNMTNLKFYHRRDD 470


>AJ845187-1|CAH60164.1|  515|Tribolium castaneum esterase protein.
          Length = 515

 Score = 21.0 bits (42), Expect = 9.4
 Identities = 6/11 (54%), Positives = 9/11 (81%)
 Frame = +2

Query: 137 KYWTDIFSHAP 169
           K+WTDI++  P
Sbjct: 501 KFWTDIYNSNP 511


>AJ844897-1|CAH59956.1|  517|Tribolium castaneum esterase protein.
          Length = 517

 Score = 21.0 bits (42), Expect = 9.4
 Identities = 6/11 (54%), Positives = 9/11 (81%)
 Frame = +2

Query: 137 KYWTDIFSHAP 169
           K+WTDI++  P
Sbjct: 503 KFWTDIYNSNP 513


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 157,206
Number of Sequences: 336
Number of extensions: 3170
Number of successful extensions: 10
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17906060
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)