Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30070
(685 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC29A4.02c |||translation elongation factor EF-1 gamma subunit... 50 4e-07
SPCC1183.02 |||glutathione S-transferase |Schizosaccharomyces po... 34 0.017
SPBC15D4.13c |||sequence orphan|Schizosaccharomyces pombe|chr 2|... 30 0.27
SPAC16.05c |sfp1||transcription factor Sfp1 |Schizosaccharomyces... 28 1.1
SPAC890.03 |ppk16|mug92|serine/threonine protein kinase Ppk16 |S... 27 1.9
SPAC821.07c |moc3||transcription factor Moc3|Schizosaccharomyces... 26 5.8
SPBC14C8.04 |||acetolactate synthase regulatory unit|Schizosacch... 26 5.8
SPBC19G7.01c |msh2|swi8, mut3, SPBC24C6.12c|MutS protein homolog... 26 5.8
SPAC1D4.03c |aut12||autophagy associated protein Aut12|Schizosac... 25 7.7
>SPAC29A4.02c |||translation elongation factor EF-1 gamma subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 409
Score = 49.6 bits (113), Expect = 4e-07
Identities = 22/56 (39%), Positives = 35/56 (62%), Gaps = 1/56 (1%)
Frame = +2
Query: 515 KDPFDSMPKGTFNMDDFKRVYSNED-EAKSIPYFWEKFDPRELFHLVCRIQIPEEL 679
K P S P G+F+++++KRVYSN+D + ++P+F+E FDP PE+L
Sbjct: 252 KHPLASAPNGSFDIEEYKRVYSNQDTRSGALPWFFEHFDPENYSVWKVDYSYPEDL 307
Score = 36.3 bits (80), Expect = 0.004
Identities = 23/82 (28%), Positives = 42/82 (51%)
Frame = +1
Query: 1 VWQWASWSDSELLPASCAWVFPYLGIMQFNKQNVERAKSDLLAALKVLDGHLLTRTFLVT 180
V Q+ S+++SEL A + P + +++Q + A++ + D L ++T+LV
Sbjct: 93 VLQYCSFTNSELPGAFRPIIAPRVFGAPYDEQAAKEAETAIALIFARFDEELASKTYLVG 152
Query: 181 ERITLADVIVFSTLLHAFQHVL 246
R+TLAD+ L +VL
Sbjct: 153 SRLTLADIFFTCFLKFGATYVL 174
>SPCC1183.02 |||glutathione S-transferase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 220
Score = 34.3 bits (75), Expect = 0.017
Identities = 19/71 (26%), Positives = 39/71 (54%)
Frame = +1
Query: 55 WVFPYLGIMQFNKQNVERAKSDLLAALKVLDGHLLTRTFLVTERITLADVIVFSTLLHAF 234
WV + G + + ++ + + + + +LK+ + + RT+LV +R TLAD + F +LL F
Sbjct: 116 WVGMFRGNIPYEEKPFKESATRAIDSLKIPNELVKDRTYLVGDRFTLAD-LFFGSLLRIF 174
Query: 235 QHVLHPRSVRR 267
+ + R+
Sbjct: 175 FNSIIDEKTRK 185
>SPBC15D4.13c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 212
Score = 30.3 bits (65), Expect = 0.27
Identities = 18/41 (43%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Frame = -2
Query: 273 LSATNGPRV*HVLESMQQCTEDNDIGKC-DSLGNKEGACEK 154
LS GPRV H+ M D D+ KC D L NKE K
Sbjct: 35 LSGFRGPRVSHLTIGMIPVKNDEDVLKCMDFLYNKEDEIRK 75
>SPAC16.05c |sfp1||transcription factor Sfp1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 442
Score = 28.3 bits (60), Expect = 1.1
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = +2
Query: 119 TYWPP*KYWTDIFSHAPSLLPRESHLPMSLS 211
TY PP Y D+FS APS+ + S+S
Sbjct: 257 TYLPPFNYDHDVFSFAPSVASADQFTESSMS 287
>SPAC890.03 |ppk16|mug92|serine/threonine protein kinase Ppk16
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 672
Score = 27.5 bits (58), Expect = 1.9
Identities = 13/41 (31%), Positives = 20/41 (48%)
Frame = +1
Query: 142 LDGHLLTRTFLVTERITLADVIVFSTLLHAFQHVLHPRSVR 264
L HLLT T +V + I+ + +H + +LHP R
Sbjct: 47 LAAHLLTNTKVVLKSSCRKQAIILAREIHHHRRLLHPNITR 87
>SPAC821.07c |moc3||transcription factor Moc3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 497
Score = 25.8 bits (54), Expect = 5.8
Identities = 11/26 (42%), Positives = 14/26 (53%)
Frame = -3
Query: 314 LWLVGDGQEPTLNVYQRRTDLGCSTC 237
L++ EPT +RRT GC TC
Sbjct: 14 LYIPNPNVEPTPKPTKRRTKTGCLTC 39
>SPBC14C8.04 |||acetolactate synthase regulatory
unit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 289
Score = 25.8 bits (54), Expect = 5.8
Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
Frame = +3
Query: 129 RLKSTGRTSSHTHLPCYRENHTCRCHCLQYTAACFPARATPEVRSSLIN-VQR 284
RLKST TS T+ + + RC ++ A P + + S+ N VQR
Sbjct: 15 RLKSTSATSPITYKALHANSPLPRCRIIEPPRATVPEAVSNIIMSTPFNRVQR 67
>SPBC19G7.01c |msh2|swi8, mut3, SPBC24C6.12c|MutS protein homolog
2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 982
Score = 25.8 bits (54), Expect = 5.8
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = +2
Query: 29 VNYCLLPVLGSSLTLVSCNSTNRML 103
V + L+P LG L + SCN+ R L
Sbjct: 259 VTHALVPELGLQLAMASCNALLRYL 283
>SPAC1D4.03c |aut12||autophagy associated protein
Aut12|Schizosaccharomyces pombe|chr 1|||Manual
Length = 513
Score = 25.4 bits (53), Expect = 7.7
Identities = 10/23 (43%), Positives = 17/23 (73%)
Frame = +3
Query: 237 ARATPEVRSSLINVQRWLLTVAH 305
+R+TPE+RS + NV++ L + H
Sbjct: 52 SRSTPELRSHVENVEQLLSDILH 74
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,745,547
Number of Sequences: 5004
Number of extensions: 54025
Number of successful extensions: 189
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 182
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 187
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 315915086
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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