Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30070
         (685 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_48657| Best HMM Match : GST_C (HMM E-Value=5.8e-07)                 73   3e-13
SB_41219| Best HMM Match : EF1G (HMM E-Value=3.3e-38)                  47   2e-05
SB_45212| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.0  
SB_35038| Best HMM Match : Ras (HMM E-Value=6.8e-13)                   28   6.1  
SB_33933| Best HMM Match : T-box (HMM E-Value=0)                       28   6.1  
SB_36561| Best HMM Match : BACK (HMM E-Value=1.4013e-45)               28   8.1  
SB_32980| Best HMM Match : DEAD (HMM E-Value=0)                        28   8.1  
SB_22642| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.1  
SB_19860| Best HMM Match : GST_C (HMM E-Value=9.6e-10)                 28   8.1  

>SB_48657| Best HMM Match : GST_C (HMM E-Value=5.8e-07)
          Length = 203

 Score = 72.5 bits (170), Expect = 3e-13
 Identities = 32/71 (45%), Positives = 50/71 (70%)
 Frame = +1

Query: 10  WASWSDSELLPASCAWVFPYLGIMQFNKQNVERAKSDLLAALKVLDGHLLTRTFLVTERI 189
           + +++D ELLPA+  WVFP  G+MQ++KQ+ ++A  D+   + +L+  LL +TFLV ER+
Sbjct: 75  YVNFADQELLPAAATWVFPTYGMMQYHKQSTDKAMEDVKKYMTMLNDVLLMKTFLVGERV 134

Query: 190 TLADVIVFSTL 222
           TLAD+ V   L
Sbjct: 135 TLADIAVCCVL 145


>SB_41219| Best HMM Match : EF1G (HMM E-Value=3.3e-38)
          Length = 90

 Score = 46.8 bits (106), Expect = 2e-05
 Identities = 19/29 (65%), Positives = 25/29 (86%), Gaps = 1/29 (3%)
 Frame = +2

Query: 545 TFNMDDFKRVYSNED-EAKSIPYFWEKFD 628
           + N+D +K+VYSNED E+K+IPYFWE FD
Sbjct: 2   SMNLDAWKKVYSNEDTESKAIPYFWENFD 30


>SB_45212| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1304

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 16/48 (33%), Positives = 23/48 (47%)
 Frame = +1

Query: 58  VFPYLGIMQFNKQNVERAKSDLLAALKVLDGHLLTRTFLVTERITLAD 201
           ++P +   Q    NV+R  +DL  + K+     L R F V E  T AD
Sbjct: 73  IYPNIMDEQIRTANVQRGSADLQTSAKITLKKFLPRCFSVIESTTSAD 120


>SB_35038| Best HMM Match : Ras (HMM E-Value=6.8e-13)
          Length = 322

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 17/42 (40%), Positives = 21/42 (50%)
 Frame = +2

Query: 161 HAPSLLPRESHLPMSLSSVHCCMLSSTCYTRGPFVADKRSAL 286
           HA +LLP   HL +  S +H C+L S C    P    K  AL
Sbjct: 161 HAAALLPFVIHLRIVESMLH-CLLPSPCIPFDPHYTSKVFAL 201


>SB_33933| Best HMM Match : T-box (HMM E-Value=0)
          Length = 402

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 15/41 (36%), Positives = 18/41 (43%)
 Frame = +2

Query: 152 IFSHAPSLLPRESHLPMSLSSVHCCMLSSTCYTRGPFVADK 274
           I SH P+  P   H    LSS     +S T    GP  +DK
Sbjct: 281 IRSHRPAPYPNPYHKRTDLSSPETFSVSRTLQAEGPLFSDK 321


>SB_36561| Best HMM Match : BACK (HMM E-Value=1.4013e-45)
          Length = 554

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 16/45 (35%), Positives = 26/45 (57%)
 Frame = +1

Query: 76  IMQFNKQNVERAKSDLLAALKVLDGHLLTRTFLVTERITLADVIV 210
           +M + K +VE  K DL   L+ +   LLTR FL+ + +   D+I+
Sbjct: 194 VMSWIKHDVESRKKDLANLLEHIRFPLLTRKFLI-DTVAKEDLIM 237


>SB_32980| Best HMM Match : DEAD (HMM E-Value=0)
          Length = 985

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 11/25 (44%), Positives = 14/25 (56%), Gaps = 2/25 (8%)
 Frame = +3

Query: 153 SSHTHLPC--YRENHTCRCHCLQYT 221
           S +T  PC  Y+   TC C C+ YT
Sbjct: 873 SHYTPFPCPHYQGGPTCECQCMGYT 897


>SB_22642| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1574

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 21/73 (28%), Positives = 33/73 (45%), Gaps = 1/73 (1%)
 Frame = +2

Query: 35  YCLLPVLGSSLTLVSCNSTNRMLNVQSLTYWPP*KYWTDIFSHA-PSLLPRESHLPMSLS 211
           Y + PV   +L ++S   +N  ++  SL + P      D  +H  P+ LP +S       
Sbjct: 291 YYMNPVRKKTLNVISLEFSNTPMS--SLVHVPAIVKELDWANHVWPTDLPEDSPHKKPYV 348

Query: 212 SVHCCMLSSTCYT 250
             +C M  S CYT
Sbjct: 349 QKYCLMSVSNCYT 361


>SB_19860| Best HMM Match : GST_C (HMM E-Value=9.6e-10)
          Length = 260

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 16/45 (35%), Positives = 28/45 (62%), Gaps = 2/45 (4%)
 Frame = +1

Query: 94  QNVERAK--SDLLAALKVLDGHLLTRTFLVTERITLADVIVFSTL 222
           ++VE AK  +D+   L  ++ HL  R FLV + +T+AD  V +++
Sbjct: 112 RDVEGAKIVADINKFLGFVEKHLAGRKFLVGDSVTIADFSVATSI 156


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,592,413
Number of Sequences: 59808
Number of extensions: 446687
Number of successful extensions: 1450
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1269
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1449
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1769412099
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)