Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30069
         (495 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g07960.1 68418.m00924 expressed protein contains Pfam PF03669...    40   0.001
At3g30320.1 68416.m03828 hypothetical protein                          30   0.98 
At5g27460.1 68418.m03279 pentatricopeptide (PPR) repeat-containi...    29   1.7  
At2g36840.1 68415.m04518 ACT domain-containing protein contains ...    28   3.0  
At1g45110.1 68414.m05171 tetrapyrrole methylase family protein c...    28   4.0  
At1g35710.1 68414.m04439 leucine-rich repeat transmembrane prote...    28   4.0  
At4g32800.1 68417.m04666 AP2 domain-containing transcription fac...    27   6.9  
At4g30710.2 68417.m04353 expressed protein contains Pfam domain,...    27   6.9  
At4g30710.1 68417.m04352 expressed protein contains Pfam domain,...    27   6.9  
At1g29170.1 68414.m03569 expressed protein ; expression supporte...    27   6.9  
At1g78980.1 68414.m09209 leucine-rich repeat transmembrane prote...    27   9.2  

>At5g07960.1 68418.m00924 expressed protein contains Pfam PF03669:
           Uncharacterised protein family (UPF0139)
          Length = 107

 Score = 39.5 bits (88), Expect = 0.001
 Identities = 19/50 (38%), Positives = 27/50 (54%)
 Frame = +3

Query: 105 DPRRADRERRYKPPPPTSAPAEDLTTDYMNILGMVFSMCGLMMRLKWCAW 254
           DPR+    + Y P P   AP EDL  DY   + ++  + G+M R K C+W
Sbjct: 13  DPRQPSAAKPYIPRPV--AP-EDLPVDYSGFIAVILGVSGVMFRYKICSW 59



 Score = 31.1 bits (67), Expect = 0.43
 Identities = 18/47 (38%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
 Frame = +2

Query: 251 VAAVFCSSISFANSR-VSDDTKQIVSSFMLSISAVVMSYLQNPAPMT 388
           +A +FC+  S AN R + +D KQI  + M +I  +V +YL    P T
Sbjct: 60  LAIIFCAQ-SLANMRNLENDLKQISMAMMFAIMGLVTNYLGPNRPAT 105


>At3g30320.1 68416.m03828 hypothetical protein
          Length = 695

 Score = 29.9 bits (64), Expect = 0.98
 Identities = 13/31 (41%), Positives = 15/31 (48%)
 Frame = +3

Query: 60  ICGPIIKSGKMQLSADPRRADRERRYKPPPP 152
           ICG     GK   S+DP R DR   +  P P
Sbjct: 156 ICGEPTNDGKASASSDPTRTDRVLTFANPKP 186


>At5g27460.1 68418.m03279 pentatricopeptide (PPR) repeat-containing
           protein low similarity to DNA-binding protein [Triticum
           aestivum] GI:6958202; contains Pfam profile PF01535: PPR
           repeat
          Length = 491

 Score = 29.1 bits (62), Expect = 1.7
 Identities = 22/85 (25%), Positives = 37/85 (43%), Gaps = 3/85 (3%)
 Frame = -1

Query: 348 AEMDNMKELTICLVSSETLEFAKLMLEQNTAATRTISISSLSHTLKIPSLKYSYNLWLGL 169
           A M+ +  L   +      E  KL  E +    + + + S+    KIP    SYNLW+  
Sbjct: 164 ALMEKLNGLGFLVTPHPFNEMMKLY-EASGQYEKVVMVVSMMKGNKIPRNVLSYNLWMNA 222

Query: 168 LLEQKW---VEVVYSDVLCQRDVDL 103
             E      VE VY +++  + V++
Sbjct: 223 CCEVSGVAAVETVYKEMVGDKSVEV 247


>At2g36840.1 68415.m04518 ACT domain-containing protein contains
           Pfam profile ACT domain PF01842
          Length = 410

 Score = 28.3 bits (60), Expect = 3.0
 Identities = 20/59 (33%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
 Frame = +2

Query: 179 HRLYEYFRDGIFNVWLNDEIEMVRVAAVFCS-SISFANSRVSDDTKQIVSSFMLSISAV 352
           + +YEY RD I +  ++ +IE+V      CS S S A +  S D     SS + + S V
Sbjct: 173 NEVYEYLRDAIGDSMISYDIELVGPEITACSTSSSVAETLFSSDVSGEHSSGLHTSSNV 231


>At1g45110.1 68414.m05171 tetrapyrrole methylase family protein
           contains Pfam PF00590 : Tetrapyrrole (Corrin/Porphyrin)
           Methylases domain; contains TIGRFAMS TIGR00522 :
           diphthine synthase
          Length = 343

 Score = 27.9 bits (59), Expect = 4.0
 Identities = 13/41 (31%), Positives = 19/41 (46%)
 Frame = +2

Query: 194 YFRDGIFNVWLNDEIEMVRVAAVFCSSISFANSRVSDDTKQ 316
           + R    ++     I     A  FCSS  FA+S   DD+K+
Sbjct: 10  FLRTSTLSILFRSPILSTTAAISFCSSSEFADSVAKDDSKR 50


>At1g35710.1 68414.m04439 leucine-rich repeat transmembrane protein
            kinase, putative similar to many predicted protein
            kinases
          Length = 1120

 Score = 27.9 bits (59), Expect = 4.0
 Identities = 14/28 (50%), Positives = 15/28 (53%), Gaps = 1/28 (3%)
 Frame = +2

Query: 155  FCSSRRPNHRLYEYFRDGIFNVWL-NDE 235
            FCS RR    +YEY   G  N  L NDE
Sbjct: 918  FCSHRRHTFLIYEYMEKGSLNKLLANDE 945


>At4g32800.1 68417.m04666 AP2 domain-containing transcription factor
           TINY, putative similar to transcription factor TINY -
           Arabidopsis thaliana, PIR2:T01076
          Length = 221

 Score = 27.1 bits (57), Expect = 6.9
 Identities = 16/61 (26%), Positives = 27/61 (44%)
 Frame = -1

Query: 366 RYDITTAEMDNMKELTICLVSSETLEFAKLMLEQNTAATRTISISSLSHTLKIPSLKYSY 187
           R D  T+E     +++    S+ET+ F+       T+   +     L   +K+PSL  S 
Sbjct: 110 RSDTETSETTTSNKMSESSESNETVSFSSSSWSSVTSIEESTVSDDLDEIVKLPSLGTSL 169

Query: 186 N 184
           N
Sbjct: 170 N 170


>At4g30710.2 68417.m04353 expressed protein contains Pfam domain,
           PF04484: Family of unknown function (DUF566)
          Length = 644

 Score = 27.1 bits (57), Expect = 6.9
 Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 3/51 (5%)
 Frame = +3

Query: 42  RVTATNICGPIIKSGKMQLSADPR-RADRERRYKPPPPT--SAPAEDLTTD 185
           R  + ++  P + S    ++A     A+R+R   PP PT  S P  DL+ D
Sbjct: 46  RCPSPSVTRPTVSSSSQSVAAKRAVSAERKRPSTPPSPTSPSTPIRDLSID 96


>At4g30710.1 68417.m04352 expressed protein contains Pfam domain,
           PF04484: Family of unknown function (DUF566)
          Length = 644

 Score = 27.1 bits (57), Expect = 6.9
 Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 3/51 (5%)
 Frame = +3

Query: 42  RVTATNICGPIIKSGKMQLSADPR-RADRERRYKPPPPT--SAPAEDLTTD 185
           R  + ++  P + S    ++A     A+R+R   PP PT  S P  DL+ D
Sbjct: 46  RCPSPSVTRPTVSSSSQSVAAKRAVSAERKRPSTPPSPTSPSTPIRDLSID 96


>At1g29170.1 68414.m03569 expressed protein ; expression supported
           by MPSS
          Length = 1016

 Score = 27.1 bits (57), Expect = 6.9
 Identities = 13/21 (61%), Positives = 16/21 (76%), Gaps = 1/21 (4%)
 Frame = +2

Query: 338 SISAVVMSYLQNPA-PMTPPW 397
           S  AV +SYLQNPA P+ PP+
Sbjct: 856 SCVAVNLSYLQNPAEPLPPPF 876


>At1g78980.1 68414.m09209 leucine-rich repeat transmembrane protein
           kinase, putative similar to leucine-rich repeat
           transmembrane protein kinase 2 GI:3360291 from [Zea
           mays]
          Length = 693

 Score = 26.6 bits (56), Expect = 9.2
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = +2

Query: 155 FCSSRRPNHRLYEYFRDGIFNVWLN 229
           +CS +  N  +YEYFR+G  + +L+
Sbjct: 459 YCSEQGHNMLVYEYFRNGSLHEFLH 483


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,145,192
Number of Sequences: 28952
Number of extensions: 201768
Number of successful extensions: 731
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 690
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 730
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 868578304
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)