Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30067X
         (311 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1734.16c |pst3||SIN3 family co-repressor|Schizosaccharomyces...    25   3.5  
SPBC1773.08c |||mannosyltransferase complex subunit |Schizosacch...    24   6.1  
SPBC713.03 |||D-lactate dehydrogenase |Schizosaccharomyces pombe...    23   8.1  
SPAC12B10.14c |ppk2||serine/threonine protein kinase Ppk2 |Schiz...    23   8.1  

>SPBC1734.16c |pst3||SIN3 family co-repressor|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1154

 Score = 24.6 bits (51), Expect = 3.5
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = +1

Query: 214 H*KNKTHFHNNMF*KTLDLYKKILYVFDRVYN 309
           H KN  H H N + + L L +   Y +DRV N
Sbjct: 536 HVKNIMH-HENQYLQALQLVEDERYDYDRVLN 566


>SPBC1773.08c |||mannosyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 391

 Score = 23.8 bits (49), Expect = 6.1
 Identities = 10/18 (55%), Positives = 10/18 (55%)
 Frame = -2

Query: 280 FFCTNLKFFRTYYYENAF 227
           F   N KFFR   YEN F
Sbjct: 286 FEIANFKFFRNEQYENFF 303


>SPBC713.03 |||D-lactate dehydrogenase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 526

 Score = 23.4 bits (48), Expect = 8.1
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = -2

Query: 271 TNLKFFRTYYYENAFYSFSGIRNY 200
           TN+ FF    YEN   +FS  R++
Sbjct: 276 TNVAFFGVPSYENVLKAFSETRSH 299


>SPAC12B10.14c |ppk2||serine/threonine protein kinase Ppk2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 665

 Score = 23.4 bits (48), Expect = 8.1
 Identities = 10/16 (62%), Positives = 12/16 (75%), Gaps = 1/16 (6%)
 Frame = +1

Query: 202 NSEFH*KN-KTHFHNN 246
           NS FH  + K+HFHNN
Sbjct: 4   NSTFHEHHAKSHFHNN 19


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,236,625
Number of Sequences: 5004
Number of extensions: 21802
Number of successful extensions: 42
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 42
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 81889040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)