Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30067X
         (311 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_1696 + 39256171-39256393,39256513-39256595,39256692-392568...    27   4.1  
12_02_0979 - 25009721-25009975,25010058-25010127,25010216-250103...    25   9.5  
01_06_1775 - 39808794-39808919,39809021-39809127,39810594-39812178     25   9.5  

>01_06_1696 +
           39256171-39256393,39256513-39256595,39256692-39256831,
           39256882-39257398,39257518-39257565,39257832-39258006,
           39258122-39258234,39258329-39258425,39258579-39258798,
           39258985-39259144,39259233-39259646
          Length = 729

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 12/35 (34%), Positives = 22/35 (62%)
 Frame = +1

Query: 178 IRC*LLSHNSEFH*KNKTHFHNNMF*KTLDLYKKI 282
           I+C +L  N EF    + HF NN   +T+++++K+
Sbjct: 76  IKCAVLEKNVEFTRHPRAHFINN---RTMEIFRKL 107


>12_02_0979 -
           25009721-25009975,25010058-25010127,25010216-25010381,
           25010501-25010651,25010843-25010890,25011172-25011225,
           25011400-25011513,25012666-25012782,25012899-25012991,
           25013085-25013123,25013990-25014055
          Length = 390

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 9/29 (31%), Positives = 18/29 (62%)
 Frame = -1

Query: 281 IFLYKSKVFQNILL*KCVLFFQWNSELWL 195
           +FLY++ ++ N LL   ++ + W   LW+
Sbjct: 51  LFLYEAFLYYNPLLLVALMIWLWGVNLWV 79


>01_06_1775 - 39808794-39808919,39809021-39809127,39810594-39812178
          Length = 605

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 9/24 (37%), Positives = 18/24 (75%)
 Frame = +1

Query: 238 HNNMF*KTLDLYKKILYVFDRVYN 309
           HN++F + L ++K++L+ F  V+N
Sbjct: 119 HNDLFEEALLVFKRLLFSFGPVHN 142


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,126,496
Number of Sequences: 37544
Number of extensions: 109257
Number of successful extensions: 109
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 109
length of database: 14,793,348
effective HSP length: 71
effective length of database: 12,127,724
effective search space used: 388087168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)