Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30067X
         (311 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g52670.1 68416.m05802 F-box family protein contains F-box dom...    26   4.6  
At1g76480.1 68414.m08897 expressed protein  ; expression support...    25   8.1  

>At3g52670.1 68416.m05802 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 384

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 11/33 (33%), Positives = 21/33 (63%), Gaps = 2/33 (6%)
 Frame = -1

Query: 179 IHLDYN*HKGSDNFTSMMFACLILENTL--QYW 87
           +HLD   +K  ++  +++ +C ILEN +  +YW
Sbjct: 128 LHLDSVSYKDEESIRNLLSSCPILENLVVYEYW 160


>At1g76480.1 68414.m08897 expressed protein  ; expression supported
           by MPSS
          Length = 177

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = +2

Query: 203 IPNSTERIKRIFIIICSEKL 262
           IPNS ER   I+ I+C E+L
Sbjct: 108 IPNSRERYFIIYNIVCEEQL 127


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,068,572
Number of Sequences: 28952
Number of extensions: 101194
Number of successful extensions: 123
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 123
length of database: 12,070,560
effective HSP length: 70
effective length of database: 10,043,920
effective search space used: 331449360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)